Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18640 153 / 3e-45 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 145 / 3e-43 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G18550 41 / 0.0003 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 40 / 0.0007 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033968 [exp] 274 / 2e-92 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 49 / 7e-07 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 48 / 1e-06 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10041967 [exp] 44 / 2e-05 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 44 / 3e-05 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10029534 [exp] 42 / 0.0001 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10025519 [exp] 40 / 0.0007 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G019500 [exp] 163 / 4e-49 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 48 / 1e-06 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 47 / 3e-06 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 46 / 7e-06 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 45 / 9e-06 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026500 [exp] 45 / 1e-05 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 44 / 2e-05 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 42 / 0.0002 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G044700 [exp] 42 / 0.0002 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G054800 [exp] 41 / 0.0002 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10012812 pacid=23142337 polypeptide=Lus10012812 locus=Lus10012812.g ID=Lus10012812.BGIv1.0 annot-version=v1.0 ATGGGAAAGAAGGTGGTTCACGTCGGGAATGTTGACAGTTCTTCTACTCGTTTCTTCCTCTTACGGGAGAGTTGGGTTTGCAATTCAGTTTTGCCTGAGC TAAGGAGAAAGGAGTATGCGGAGTTGGATCATCCTCCGGTTTACAATCACACTTTGGCTACAATATTGGTGGAGTATGCTTCTGCGTTGGCCAAGTCCAT GTTTGTTCAGAGTGATTATTTTTTTGGGGTCTGGAAACCCTTGATTGGAGGTTGTGCCTTGACTTTTGCCGGACAACTGGATCTTGACAGCTTACAGAAT TGGATTGAAGACCTCTACTGGAAGCAGCTCGATTTAGATTATCCTGGAATGCCTGATGCAATGGTGCATCATGGGTTCTATTCTGCATACCACAACACCA CAATACGGTCTGGAATTCTTAAAGCCATTAGAAAAGCCAAGCAGCATTATGGGGAGCTTGGCATCATGTTGACTGGTCATTCAATGGGTGCAGCCATGGC TGCTTTCTGTGCACTTGATCTAGTAGTAAGTGGTTTATTAGAAATCACTGTATTGGCATTTTTGTCCGCCTCGTCCTTTATGAATGGCCGTTAG
AA sequence Show only first row Show all	>Lus10012812 pacid=23142337 polypeptide=Lus10012812 locus=Lus10012812.g ID=Lus10012812.BGIv1.0 annot-version=v1.0 MGKKVVHVGNVDSSSTRFFLLRESWVCNSVLPELRRKEYAELDHPPVYNHTLATILVEYASALAKSMFVQSDYFFGVWKPLIGGCALTFAGQLDLDSLQN WIEDLYWKQLDLDYPGMPDAMVHHGFYSAYHNTTIRSGILKAIRKAKQHYGELGIMLTGHSMGAAMAAFCALDLVVSGLLEITVLAFLSASSFMNGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10012812 [exp]	0	1
AT2G40110			Yippee family putative zinc-bi...		Lus10040190 [exp]	3.2	0.9172
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	15.3	0.9057
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	18.8	0.8937
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	19.6	0.9024
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	26.5	0.9033
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022060 [exp]	29.0	0.8847
AT3G50150			Plant protein of unknown funct...		Lus10039369 [exp]	33.6	0.9010
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10036788 [exp]	37.8	0.8872
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	39.6	0.8992
AT4G06676			unknown protein		Lus10019950 [exp]	40.8	0.8833

Compare expression of checked genes

Lus10012812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.