Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18620 852 / 0 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 850 / 0 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT3G06010 229 / 4e-62 ATCHR12 Homeotic gene regulator (.1) AT2G28290 221 / 6e-59 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G66750 216 / 8e-59 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT5G19310 213 / 1e-56 Homeotic gene regulator (.1) AT3G57300 206 / 4e-54 ATINO80 INO80 ortholog (.1.2) AT3G12810 205 / 1e-53 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G46020 196 / 8e-51 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT2G13370 181 / 3e-46 CHR5 chromatin remodeling 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033967 [exp] 958 / 0 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10024019 [exp] 225 / 2e-61 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041735 [exp] 223 / 4e-61 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10034064 [exp] 224 / 2e-60 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 221 / 2e-59 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10002974 [exp] 209 / 6e-55 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10031050 [exp] 207 / 1e-54 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10012798 [exp] 206 / 4e-54 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10036371 [exp] 194 / 3e-50 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G021400 [exp] 889 / 0 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 884 / 0 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.019G129900 [exp] 223 / 2e-61 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.010G019150 [exp] 225 / 3e-60 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G026700 [exp] 219 / 4e-60 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G149900 [exp] 221 / 3e-59 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 220 / 4e-59 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G195900 [exp] 219 / 3e-58 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.016G043500 [exp] 212 / 4e-56 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.006G047100 [exp] 211 / 6e-56 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09111 [flax] [poplar] SLIDE SLIDE CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] PF09110 [flax] [poplar] HAND HAND
Representative CDS sequence Show only first row Show all	>Lus10012813 pacid=23142345 polypeptide=Lus10012813 locus=Lus10012813.g ID=Lus10012813.BGIv1.0 annot-version=v1.0 ATGGCGAGACCATCGAAGCAGCATTCGTTGTCCGACGATTCCTTGTCCAACGCCTCCAATTCGTCCGACGAGGAGCAAAAGAACGACCAGATCAACGAAG AGGAAGACGAGCAGGAGCTCGAAGCTGTGGCTCGCAGTGCTGATGACTCCGACGATGATGAAGCCGGCGCTGATGCAGCTGAAGAAGATGATAACGATGA GACCGAGGAGGCTGAAGAGGATACAAACAACAATGAACTGAGCAAGCGTGAAAAGGCTAGACTCAAGGAGATGCAGCGGCTTAAGAAAGAAAAGATCCAA GAAATATTGGATGCGCAAAATGCTTCAATAGATGCTGATATGAACAATAAAGGCAAAGGCCGCTTGAAATATCTACTGCAGCAGACGGAGTTATTTGCTC ACTTTGCCAAGGCTGACCAGTCTGCTACTTCCAAGGGGAAAGGAAGGTATAGTGTGCATCATTCAGAAGTCTCCTACTTTGTGATGTCCCATGGATTTGT TCTAAACGAATATGTGCCTAGTATTCAGGGAAAGATGAGGGATTATCAGCTGGCTGGATTAAACTGGCTCATCAGACTGTATGAGAATGGTATAAATGGA ATACTTGCCGATGAGATGGGTCTTGGTAAGACGTTACAAACTATCTCCTTGCTGGGATACTTGCACGAATTCAGAGGGATTCCTGGTCCTCATATGGTAG TTGCACCAAAATCTACACTTGGGAATTGGATGAATGAAATTCGCCGGTTTTGTCCAGTCCTCCGCCCTGTCAAGTTCCTTGGCAACCCTGAAGAAAGGAG GCATATCCGTGAGGATTTGCTTGTTGCTGGGAAGTTTGATGTATGTGTCACAAGTTTTGAAATGGCCATTAAAGAGAAGTCCGCTCTACGGCGCTTTAGC TGGCGCTACATAATTATTGATGAAGCTCATCGGATAAAGAACGAGAATTCTCTTCTTTCAAAAACAATGAGACTCTTTACTACCAACTACCGCTTACTCA TCACCGGAACTCCTCTTCAGAACAATCTTCATGAACTATGGGCTCTGCTCAACTTCCTACTACCAGAGATTTTTAGCTCTGCTGAAACATTTGATGAGTG GTTCCAAATATCTGGTGAGAATGACCAGCAGGAGGTTGTGCAGCAACTGCACAAGATGACAAGATTGCTTGACATTCTTGAGGATTATCTAATGTTTCGT GGCTATCAATACTGTCGTATTGATGGAAATACTGGCGGAGATGATCGTGATGCTTCCATTGAAGCCTACAACAAACCGGGAAGTGAGAAGTTTGTGTTCT TGCTGTCAACCAGGGCTGGTGGACTTGGTATTAATCTTGCTACTGCGGATGTTGTCATTCTGTATGACAGTGACTGGAATCCACAAGTTGATTTGCAAGC GCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTGTTTCGGTTCTGCACAGAGTATACTATTGAAGAAAAGGTCATTGAAAGAGCTTAT AAGAAACTCGCTCTTGATGCTTTGGTTATTCAACAAGGAAGGCTGGCTGAGCAGAAAGCTGTCAACAAAGATGAGCTGCTTCAAATGGTGAGGTTTGGTG CTGAAATGGTTTTCAGCTCAAAGGATAGTACAATCACAGATGAGGACATTGACAGAATCATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAA GATGAAGAAATTTACAGAGGATGCGATTAAATTCAAGATGGACGACACGGCTGAATTGTATGATTTTGATGACGACACGGATCAGAACAAAGTCGACTTC AAAAAACTTGTCAGTGACAACTGGGTAGAACCTCCAAAGAGAGAGAGGAAGCGCAATTACTCAGAATCTGAATACTTTAAGCAAACAATGCGACAAGGTG CTCCAGCTAAACCTAAGGAGCCTAGAATTCCTCGCATGCCACAATTGCATGATTTCCAGTTTTTCAACACACAGAGGCCTTCCAATACCCTAACTCTTTG TCCCTGGTTTACTTGCCAGCAAACACATCAAAAGAATCAGGTAAAAGACACGATAGATGTTGATGAACCTGAAGAGGTTGGAGAACCATTGACTGCTGAG GAACTTGAAGAAAAGGAGAAGTTGTTAGAAGAGGGTTTCTCTTCGTGGACTAGAAGGGACTTCAGTACATTCATTAGGGCTTGTGAGAAGTACGGAAGAA ATGACATCAACAGCATTGCAACTGAAATGGAAGGCAAAACAGAGGAAGAGGTCGAGAGATATGCAAAAGTTTTCATGGAAAGATATAACGAACTGAACGA TTATGATAGAATCATCAAGAACATTGAAAGAGGGGAGGGCAGAATTTCTCGTAAAGATGAGATTATGAAAGCCATTAGTAAGAAACTGGATCGCTACAAG AACCCATGGCTTGAGTTGAAGATCCAGTACGGTCAGAACAAAGGGAAGTTGTACAATGAGGAATGTGATCGTTTCATGATGTGCATGATTCACAAGCTAG GATATGGTAATTGGGATGAGCTGAAAGCATCATTTCGCACGTCGCCTTTGTTTCGGTTCGACTGGTTTGTCAAGTCTCGAACAACTCAGGAGCTTGCGAG AAGATGCGATACCTTAATCCGATTGGTAGAGAAGGAAAATCAAGAATATGAAGAGAGGGAAAGGCAAGCTCGCAAAGAGAAGAAGGTTGCCAAGCAAAGT ATGACACCATCCAAGCGTGGTGGTGGTGGGAGGCAAGCTGAGAGCCCCCCCAGTAGTCTCAAGAAGCGGAAGCAATCATCCATGGATGATTACCTCCTGA CCTCTCTAAATTTGAACCCTCTTTCAATGTGCAAGGCTGATTGCGAGTTTGTTTCAAAATGA
AA sequence Show only first row Show all	>Lus10012813 pacid=23142345 polypeptide=Lus10012813 locus=Lus10012813.g ID=Lus10012813.BGIv1.0 annot-version=v1.0 MARPSKQHSLSDDSLSNASNSSDEEQKNDQINEEEDEQELEAVARSADDSDDDEAGADAAEEDDNDETEEAEEDTNNNELSKREKARLKEMQRLKKEKIQ EILDAQNASIDADMNNKGKGRLKYLLQQTELFAHFAKADQSATSKGKGRYSVHHSEVSYFVMSHGFVLNEYVPSIQGKMRDYQLAGLNWLIRLYENGING ILADEMGLGKTLQTISLLGYLHEFRGIPGPHMVVAPKSTLGNWMNEIRRFCPVLRPVKFLGNPEERRHIREDLLVAGKFDVCVTSFEMAIKEKSALRRFS WRYIIIDEAHRIKNENSLLSKTMRLFTTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKMTRLLDILEDYLMFR GYQYCRIDGNTGGDDRDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAY KKLALDALVIQQGRLAEQKAVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDTDQNKVDF KKLVSDNWVEPPKRERKRNYSESEYFKQTMRQGAPAKPKEPRIPRMPQLHDFQFFNTQRPSNTLTLCPWFTCQQTHQKNQVKDTIDVDEPEEVGEPLTAE ELEEKEKLLEEGFSSWTRRDFSTFIRACEKYGRNDINSIATEMEGKTEEEVERYAKVFMERYNELNDYDRIIKNIERGEGRISRKDEIMKAISKKLDRYK NPWLELKIQYGQNKGKLYNEECDRFMMCMIHKLGYGNWDELKASFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYEERERQARKEKKVAKQS MTPSKRGGGGRQAESPPSSLKKRKQSSMDDYLLTSLNLNPLSMCKADCEFVSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	0	1
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	2.0	0.8835
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	4.6	0.8705
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	6.3	0.8675
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	6.3	0.8687
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10030377 [exp]	9.2	0.8610
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	10.8	0.8719
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10014632 [exp]	14.0	0.8283
AT4G37250			Leucine-rich repeat protein ki...		Lus10019315 [exp]	15.5	0.8083
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	19.0	0.8232
AT1G15420			unknown protein		Lus10030351 [exp]	19.1	0.8558

Compare expression of checked genes

Lus10012813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.