Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 724 / 0 Protein kinase superfamily protein (.1.2) AT5G13160 560 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 542 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G07870 511 / 1e-179 Protein kinase superfamily protein (.1.2) AT3G20530 491 / 3e-172 Protein kinase superfamily protein (.1) AT3G07070 480 / 1e-167 Protein kinase superfamily protein (.1) AT2G28590 479 / 3e-167 Protein kinase superfamily protein (.1) AT1G20650 470 / 3e-164 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G13190 463 / 2e-161 Protein kinase superfamily protein (.1) AT3G24790 462 / 2e-161 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033966 [exp] 863 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 575 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 572 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 567 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 567 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 563 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 510 / 4e-180 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 508 / 3e-178 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 486 / 7e-170 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205700 [exp] 771 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 766 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 622 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 585 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 585 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 575 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 548 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 505 / 6e-178 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 500 / 1e-175 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 494 / 2e-173 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012814 pacid=23142368 polypeptide=Lus10012814 locus=Lus10012814.g ID=Lus10012814.BGIv1.0 annot-version=v1.0 ATGGGTGGGTGCTTTCCTTGTTTCGGATCATCGAACAAGGGCGGCGGCGGAGCTGGTGGCAAAGAAGTAGTTGCGAGGAAAGATTCGGTCAAGGAAGCCT CTGTTACTCAGTCTCAACATGTTACCAGAGTTGGCTCAGACAAATCAAAATCCCGGGGTGGTTCTGAGTCGAAAAAAGAGCCACCGATCCCGAAAGATGG ATCAACAGCTCATATTGCAGCTCAAACGTTCACATTCCGTGAGCTAGCTGCTGCCACCAAGAATTTTAGACCTGAGTGCTTGTTGGGAGAAGGAGGGTTT GGGCGTGTCTATAAAGGCCGACTCGAGACCACTGGACAGGTCGTAGCGGTGAAACAACTTGACCGGAATGGACTGCAAGGAAACAGAGAGTTTTTGGTTG AAGTTCTCATGCTCAGTCTGCTACACCACCCTAACCTTGTCAACTTAATTGGCTATTGTGCTGACGGGGATCAGCGGCTCCTTGTCTACGAATACATGCC CTTGGGTTCACTGGAGGATCATCTACATGACCTTCCGACAGACAAAGAACCATTGGACTGGAATACAAGAATGAAGATAGCAGCCGGGGCAGCTAAGGGG TTGGAGTACTTGCATGATAAAGCAAACCCACCTGTCATCTACAGAGATTTAAAATCATCAAACATCCTTCTTGACGAGGGGTTTCACCCCAAGTTATCAG ATTTCGGACTAGCCAAACTTGGTCCTGTTGGTGACAAGACTCATGTCTCGACACGTGTCATGGGGACTTACGGTTATTGTGCTCCTGAATATGCCATGAC CGGACAACTTACACTCAAATCTGATGTTTACAGCTTCGGAGTAGTGTTTCTCGAACTCATCACCGGGCGAAAGGCCATTGACAACACAAGGGCTCCCGGA GAACACAATCTCGTCGCATGGGCAAGGCCGCTCTTCAAGGATCGTAGGAAGTTCCCGAAAATGGCGGATCCGTTACTTCAAGGGCGGTACCCAATGCGAG GACTATATCAAGCACTTGCAGTCTCAGCGATGTGCTTGCAAGAACAAGCTGCTACAAGACCTTTGATAGGGGATGTGGTGACGGCATTGTCATATTTAGC TTCTCAGACTTATGACCCAAATGCCCCCAACCAGAGTAACAGAGTTGGATCGTCTACTCCGAGGAGCAGGGATGACAGAAGAAGCATGGGAGATGGAGGA ATGGATAGCCCTGATGGTAGGCTCGGGTCTCCATCTGTACATAGGAACTCGCCGGATTACAGAAAGAGGGACCGGCAGAGAGAAGTGGGGGAATCTGGTG GAGGTTCGGGCAGAAGGTGGGGTGGTCTGGAGGAGCTAGAACGAAACGATTCTCAGAGAGACAGTCCGGTGAATGGGGGCAGCAGCAGAATGAGGGAAAC TCCGAGGAATCGCGATATAGATAGGGAACGAGCAGTTGCGGAGGCGAAGGTATGGGGAGAGAACTGGAGGGAGAAGAAGCGGGCAAATGCAGCTGGTAGC TTTGATGGTGGGAGTAATCATGAATGA
AA sequence Show only first row Show all	>Lus10012814 pacid=23142368 polypeptide=Lus10012814 locus=Lus10012814.g ID=Lus10012814.BGIv1.0 annot-version=v1.0 MGGCFPCFGSSNKGGGGAGGKEVVARKDSVKEASVTQSQHVTRVGSDKSKSRGGSESKKEPPIPKDGSTAHIAAQTFTFRELAAATKNFRPECLLGEGGF GRVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPTDKEPLDWNTRMKIAAGAAKG LEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPG EHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVSAMCLQEQAATRPLIGDVVTALSYLASQTYDPNAPNQSNRVGSSTPRSRDDRRSMGDGG MDSPDGRLGSPSVHRNSPDYRKRDRQREVGESGGGSGRRWGGLEELERNDSQRDSPVNGGSSRMRETPRNRDIDRERAVAEAKVWGENWREKKRANAAGS FDGGSNHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18610			Protein kinase superfamily pro...		Lus10012814 [exp]	0	1
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	4.9	0.8852
AT2G31410			unknown protein		Lus10035165 [exp]	6.0	0.8617
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	7.7	0.8852
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	8.7	0.8933
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10014765 [exp]	8.8	0.8605
AT4G38790			ER lumen protein retaining rec...		Lus10007570 [exp]	10.8	0.7984
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	12.2	0.8657
AT5G56520			unknown protein		Lus10020285 [exp]	14.3	0.8509
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	15.9	0.8647
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10029011 [exp]	17.2	0.8222

Compare expression of checked genes

Lus10012814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.