Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14190 519 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 509 / 2e-178 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 357 / 1e-117 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 350 / 6e-115 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 344 / 1e-112 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 336 / 1e-109 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 319 / 3e-103 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 300 / 2e-95 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026606 [exp] 815 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 772 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012817 [exp] 723 / 0 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 696 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 683 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 677 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030458 [exp] 665 / 0 AT1G14185 481 / 5e-167 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 664 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 662 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 592 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 591 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 572 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 348 / 2e-114 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 343 / 5e-112 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 339 / 1e-110 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 330 / 1e-107 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 257 / 2e-80 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 57 / 1e-09 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10012816 pacid=23162980 polypeptide=Lus10012816 locus=Lus10012816.g ID=Lus10012816.BGIv1.0 annot-version=v1.0 ATGACATCGAATGTCCACGAGGTAGCAGGAAAGTCCTTCGACTACATCGTGGTAGGCGGAGGAGCAGCCGGTTGCCCTCTCGCCGCCACCCTCTCTCAAA AATTCTCCGTTCTACTAATCGAACGGGGCGGCTCGCCATACGGGAACCCTTGGATAAGAGAGGCGCGCTTCCTTGGGGCCCCGTTGCTCCAACCCGATGA ATTCTCATCGGTCGCCCAATCATTGACTTCCAAGGAAGGAGTAACAATCTTTAGAGGAAGAGTCCTCGGAGGGACAACGGCCATAAACGCTGGGTTCTAC AGTAGAGCTAGCGCCACATTCGTGGCTAAATCGGGTTGGGATCAACGGCTGGTGAAGGAATCTTACGAATGGGTTGAATCTAAAATCATTAGTAAACCAA CCAAGCTTCCAGAGTGGCAAGTTGCTGTCAGGTCTAGGTTCCTTAAAGCGGGAATCTTACCTGACAACGGATTCACCTGGGAACACATCGAAGGAACGAA GATTGGCGCGTCAATTTTCGATTCACAGAACAAGAGACATACCTCCGCTGATCTTCTGCGGACGGGAAGACCCGAGAACATCAGAGTTCTGTTGAATGCG ACGGTCAAGAGTGTCATATTCAACAACGGAGGATCAGACAAGACCACTGCTCGTGGAATCCAATTCATAAGTAGCCACGGTACCGGAGACCAAACCTATG AAGTTTACCTTAACCAACCAGCAAATTCTTCTTGTTCGTCCGGAGACGTGATATTATCAGCCGGGGCGATAAGCAGCCCTCAGATCCTCCTACTGAGCGG CATCGGACCAAAACTCCATCTCGACCAGCTCAACATCCCACTCATCCTCGAGTCGAACCACGTGGGACGGGAAGTGCAGGACAACCCGGGGATTTTCCTC TTGGTCGGTTCGAAACCCGGACACCAGCTCCCGGAGAGACCACTAGTTGCAGGAATAACAAAAGGATTCAACTTCGTCATCGAATGCCTTATCAGAGTAC TGAGCTCCAACACTACAGGGAAGATTGTATTGGTCAAGCTAGCATTCCCGGAATCGAGAGGGAAGCTGGAACTAAACTCGACCGATCCCAGGAAGAACCC TGTAGTGTCGTACAACTACCTGAAGACAAAGAAAGACATGGATGGATGTGTGGAAATGGCCGAGTTGGCAATGACCGTTGCCAAGACTCTATCTCGGGAT ACGTACGTGGTGTCGAATCCCGATGAGTTGCGGACTTACTGCAAGAAGAATGTCACTAGTTACTTCCATTACCACGGTGGGTGTGCTCTTGGATCTGTTG TTGACCAGGATTATAGAGTGGTTGGTGTCGATGGTTTGAGAGTTGTCGATGGGTCGACTTTCCTCGAATCGCCCGGAACGAATCCTATGGCTACAGTTTT GATGCTTGGCAGGTATCAAGGGATCAAGATCCTTGCCGAGAGGATGAAATGA
AA sequence Show only first row Show all	>Lus10012816 pacid=23162980 polypeptide=Lus10012816 locus=Lus10012816.g ID=Lus10012816.BGIv1.0 annot-version=v1.0 MTSNVHEVAGKSFDYIVVGGGAAGCPLAATLSQKFSVLLIERGGSPYGNPWIREARFLGAPLLQPDEFSSVAQSLTSKEGVTIFRGRVLGGTTAINAGFY SRASATFVAKSGWDQRLVKESYEWVESKIISKPTKLPEWQVAVRSRFLKAGILPDNGFTWEHIEGTKIGASIFDSQNKRHTSADLLRTGRPENIRVLLNA TVKSVIFNNGGSDKTTARGIQFISSHGTGDQTYEVYLNQPANSSCSSGDVILSAGAISSPQILLLSGIGPKLHLDQLNIPLILESNHVGREVQDNPGIFL LVGSKPGHQLPERPLVAGITKGFNFVIECLIRVLSSNTTGKIVLVKLAFPESRGKLELNSTDPRKNPVVSYNYLKTKKDMDGCVEMAELAMTVAKTLSRD TYVVSNPDELRTYCKKNVTSYFHYHGGCALGSVVDQDYRVVGVDGLRVVDGSTFLESPGTNPMATVLMLGRYQGIKILAERMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10012816 [exp]	0	1
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	3.0	0.7339
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	3.7	0.7859
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003264 [exp]	9.2	0.6703
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005599 [exp]	13.2	0.6981
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015644 [exp]	14.1	0.6239
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	15.1	0.7597
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	15.9	0.6400
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	23.7	0.6676
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	23.8	0.6836
					Lus10035602 [exp]	26.1	0.7155

Compare expression of checked genes

Lus10012816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.