Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 544 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 530 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 370 / 3e-122 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 368 / 1e-121 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 360 / 1e-118 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 360 / 2e-118 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 351 / 3e-115 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 327 / 1e-105 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030458 [exp] 892 / 0 AT1G14185 481 / 5e-167 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 821 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 771 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 749 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 721 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 672 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 671 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 671 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 663 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168200 [exp] 616 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 605 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 597 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 380 / 5e-126 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 366 / 1e-120 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 362 / 8e-119 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 355 / 1e-116 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 256 / 1e-79 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 52 / 5e-08 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10012817 pacid=23163026 polypeptide=Lus10012817 locus=Lus10012817.g ID=Lus10012817.BGIv1.0 annot-version=v1.0 ATGGACCGGATCAGCATCATCTCTTTGCTGCTGCTGCTGCTTCTTCACTCATGTCGTTCTTCTGCCCAGCTGCTTCGAGGAGCGAAATTCCCTTACATGA CTTCAAATGTCGACGAGGTAGCGGGAAAGTCCTTCGACTACATCGTGGTAGGTGGAGGTGCAGCCGGTTGTCCGCTTGTAGCTACACTCTCGAAAAATTT CTCTGTGCTACTAATCGAGCGTGGTGGATCGCCATATGGGAACCCGTGGATAACAGAGAAGCGCTACTTTGGCTTCCCAATGATCGAAACTGATGAATTC ACGTCGGTCTCCCAATCATTGATTACCAATGAAGGAGTGAAACTTCACAGAGGAAGAGTCCTCGGAGGATCAACGGCTATAAACGGAGGGCTCTACAGCA GAGCAAGCGGTGAATTTGTCACGAAATCGGGCTGGGATAAACAGTTGGTGAATGAATCTTATGAATGGGTTGAATCTAAGATCATTACTAAGCCTGTTGT GCTGTCGGAGTGGCAATCTTCTGTCAGGTCTGGATTCCTCGCAGCGGGAATCCTTCCGGACAACGGATTCTCTTGGGAACACATCGAGGGAACGAAGATT AGCGGGACCATATTTGATTCGCAGAGTAAGAGACACACCTCTGCTGATCTTCTGCAAGCGGGAAGACCCGAGAACATCATAGTTCTATTGAATGCTACCG TGAAGAGTGTCATGTTCAACCGAGAGACACAAAATGCCACTGCTCGCGGCATCCAATTCATGAGCAGCAATGGTACAGTAGATCGAATCTATGAAGCTTA CATTAACCAATCAGCAAATTCAACTCGAAATTCATCCGGGGACGTGATATTATCAGCGGGGGCATTAAGCAGCCCTCAAATCCTCCTACTGAGCGGGATC GGACCGACGCTCCAGCTCAACCAACTCAACATCCCAGTCATCCTCGAGTCAAACAACGTGGGGCTCGAAGTGCAAGACAACCCGGCACTTAACATCTTGG TCGGCTCGAAAATCGGAGACAAGCTCCCGGACACACCACAAGTTGTAGGAATAACAGCAGGATTCAAATCCATCGTCCAGGGCTTCATCGTAGCAATAAG CTCCAACGCTACAGGGAACATGACATTGGTCAAGCTAGCATTCCCGGAATCGAGAGGGAAGCTGGAACTGAACTCGACCGATCCCAGGAAGAACCCTGTA GTGTCGTACAACTACTTGGGGACACAGAAAGACATGGATGGATGTGTGGAGATGGCTAAGGTGGCAATGAGTGTCGCCAAGTATCTATCTCAGGAGACGA ACGTGGTGTCGAATCCCGACGAGCTGCCTACTTACTGCAGGAATAATGTCGGGACAAACTTCCATTACCATGGTGGTTGTGCTCTTGGATCCGTTGTTGA TCAGGATTATAGAGTGCTTGGTGTCAAAGGTTTGAGAGTTGTGGATGGCTCGACGTTCTCGGAATCGCCCGGATCGAATCCCATGGCTACACTTATGATG CTTGGCAGGTATCAAGGTATCAAGATTCTTGCTGACAGGATGAAATAA
AA sequence Show only first row Show all	>Lus10012817 pacid=23163026 polypeptide=Lus10012817 locus=Lus10012817.g ID=Lus10012817.BGIv1.0 annot-version=v1.0 MDRISIISLLLLLLLHSCRSSAQLLRGAKFPYMTSNVDEVAGKSFDYIVVGGGAAGCPLVATLSKNFSVLLIERGGSPYGNPWITEKRYFGFPMIETDEF TSVSQSLITNEGVKLHRGRVLGGSTAINGGLYSRASGEFVTKSGWDKQLVNESYEWVESKIITKPVVLSEWQSSVRSGFLAAGILPDNGFSWEHIEGTKI SGTIFDSQSKRHTSADLLQAGRPENIIVLLNATVKSVMFNRETQNATARGIQFMSSNGTVDRIYEAYINQSANSTRNSSGDVILSAGALSSPQILLLSGI GPTLQLNQLNIPVILESNNVGLEVQDNPALNILVGSKIGDKLPDTPQVVGITAGFKSIVQGFIVAISSNATGNMTLVKLAFPESRGKLELNSTDPRKNPV VSYNYLGTQKDMDGCVEMAKVAMSVAKYLSQETNVVSNPDELPTYCRNNVGTNFHYHGGCALGSVVDQDYRVLGVKGLRVVDGSTFSESPGSNPMATLMM LGRYQGIKILADRMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012817 [exp]	0	1
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	1.4	0.9463
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	3.5	0.9367
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10009025 [exp]	7.2	0.9047
AT3G50610			unknown protein		Lus10009346 [exp]	8.5	0.8843
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	12.4	0.9311
AT5G45120			Eukaryotic aspartyl protease f...		Lus10018286 [exp]	12.6	0.9178
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	13.6	0.8595
AT5G42500			Disease resistance-responsive ...		Lus10021084 [exp]	15.0	0.8864
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10013782 [exp]	15.6	0.9199
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	15.7	0.9177

Compare expression of checked genes

Lus10012817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.