Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 499 / 1e-170 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 494 / 1e-168 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 332 / 2e-104 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 329 / 8e-104 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 320 / 2e-100 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 314 / 6e-98 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 281 / 2e-85 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 220 / 6e-63 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030459 [exp] 715 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030462 [exp] 677 / 0 AT1G14185 567 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030463 [exp] 665 / 0 AT1G14185 504 / 5e-176 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 656 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 631 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 608 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 605 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 602 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 591 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 554 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 549 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 544 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 337 / 1e-106 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 317 / 2e-99 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 315 / 6e-98 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 311 / 9e-97 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 254 / 9e-77 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 45 / 2e-05 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10012818 pacid=23162991 polypeptide=Lus10012818 locus=Lus10012818.g ID=Lus10012818.BGIv1.0 annot-version=v1.0 ATGAAATCGGGTTGGGATAAGCAGCTGGTGAAGGAATCTTATGAATGGGTTGAATCTAAGATCGTTACTAAACCTGATCAACTGACAACGTGGCAAGCTG CTGTGAAATCTCAATTCCTTGAAGCAGCTGGAATCCTTCCTTACAACGGATTCACCTGGGAGCACATCAAAGGAACGAAGCTCAGTGGGTCAATCTTCGA TTCACGAGGGACGAGACATACCTCTGCCGATCTTCTTCAGATGGGAAGACCAGAGAACATCAAAGCGGAGGGGCAGCCGGTTGTCTCCTTACAGCCACCC TCTCCGGAGAAATTCTCCGTTTTACTAATCGAGCGTGGTGGATCGCCATATGGGAACCCGTGGATAACAGAGAAGTGCTTCTTTGGCTTCCCATTGCTCC AGGCCGACGAATTCTCGTCGGTCTCCCAATGGTTCATTTCCAAAGAAGGAATAGCAAACCACAGAGGAAGGGTCCTTGGAGGATCAACGGCTATAAATGG AGGGTTCTACGGTAGAGCTAGTGACAGATTCGTTATGAAATCGGGTTGGGATAAGCAGCTGGTGAAGGAATCTTATGAATGGGTTGAATCTAAGATCGTT ACTAAACCTGATCAACTGACAACGTGGCAAGCTGCTGTGAAATCTCAATTCCTTGAAGCAGCTGGAATCCTTCCTTACAACGGATTCACCTGGGAGCACA TCAAAGGAACGAAGCTCAGTGGGTCAATCTTCGATTCACGAGGGACGAGACATACCTCTGCCGATCTTCTTCAGATGGGAAGACCAGAGAACATCAAAGT TCTGTTCAATCCTACAGTCAAGAGTGTCATATTCAGAAACAGTGGAGCGAAATTTCCTTACATGACTTCAAATTTCAATGAGGTAGCAGGGGAGTCGTTC GACTACATCGTGGTAGGCGGAGGAGCAGCCGGCTGCCCTCTTGCCGCTACCCTCTCCGAGAAATTATCCGTTCTACTAATCGAACACGGTGGGTCGCCAT ATGGGAACCCGTGGATAATGAACAAGCGTTTCTACGGCTTCCCATTGCTCCAGACAGACGAATTCTCGTCGGTCTCCCAGTCATTCACTTCCAAGGAAGG AGTGGTTAACCATAGAGGAAGAGTCCTCGGAGGAACAACAGCCTTAAATGCAGGGTTCTACAGTAGAGCTAGCAATGATTTCGCGAGGACAGCGGGTTGG GATGAGGAGCTGGTGAAGGAATCTTATGAATGGGTTGAATCTAAGATCGTTACTAAACCTGATCAACTGACAACGTGGCAAGCTGCTGTGAAATCTCAAT TCCTTGAAGCAGCTGGAATCCTTCCTTACAACGGATTCACCTGGGAGCACATCAAAGGAACGAAGCTCAGTGGGTCAATCTTCGATTCACGAGGGACGAG ACATACCTCTGCCGATCTTCTTCAGATGGGAAGACCAGAGAACATCAAAGTTCTGTTCAATCCTACAGTCAAGAGTGTCATATTCAGAAACAGTGTTCTC TTGAATGCAACAGTAAAGAGCGTTATATTCGACAAAGGAAGCCCTCAGATCCTACTACTAAGTGGCATCGGACCGAAACCCCATCTCAACCAACTCAACA TCCCAATCGTACTTGAATCGAATCAGGTGGGACGGGATGTGAAAGATGACCCTTCAGTATCCATCTGGGTCGAATCGAACCCCAAGCATCAGGTCCCAGA CTTAGCACCATTGGCAGGCATTAGAAAAGGATCTGACTTTGTCATTGAAAGCCTCACCGCACCATTCGGCTTGAACGGTATGGGGATTGGGGTAGTAGCC GCCAAGCTAGCATTCCCGGAATCCAAAGTGAAGCTGGAACTGAACTCGACCGATCCCAGGAAAAACCCTCAAGTCTCGTACAACTACTTGGAGTCGGAGA AAGACATGGATGTGTGTGTGGAGATGACCCAAGTTTTGAATGAGGTTGCCCGTTCTCGAGCTGTGGAAAGGTTCCTAGGGAATGTAGCTCAGGTTAACTG GACAAGGAATCCTGATGAGTTGCGGACTTTCTGCAGGAGTAAGTTGAGGAGTTTCTATCATTACCATGGTGGGTGTGGAGTTGGATCAGTTGTTGGTCAG GATTACAGAGTGGTTGGTGTTGAAGGTTTGAGAGTCGTCGATGGGTCGAATTTTCTAGAGTCGCCCGGGATGCTTGGTAGATATCAGGGGATCAAGATTC TTGCCGAGAGGGAGAATAGTTAA
AA sequence Show only first row Show all	>Lus10012818 pacid=23162991 polypeptide=Lus10012818 locus=Lus10012818.g ID=Lus10012818.BGIv1.0 annot-version=v1.0 MKSGWDKQLVKESYEWVESKIVTKPDQLTTWQAAVKSQFLEAAGILPYNGFTWEHIKGTKLSGSIFDSRGTRHTSADLLQMGRPENIKAEGQPVVSLQPP SPEKFSVLLIERGGSPYGNPWITEKCFFGFPLLQADEFSSVSQWFISKEGIANHRGRVLGGSTAINGGFYGRASDRFVMKSGWDKQLVKESYEWVESKIV TKPDQLTTWQAAVKSQFLEAAGILPYNGFTWEHIKGTKLSGSIFDSRGTRHTSADLLQMGRPENIKVLFNPTVKSVIFRNSGAKFPYMTSNFNEVAGESF DYIVVGGGAAGCPLAATLSEKLSVLLIEHGGSPYGNPWIMNKRFYGFPLLQTDEFSSVSQSFTSKEGVVNHRGRVLGGTTALNAGFYSRASNDFARTAGW DEELVKESYEWVESKIVTKPDQLTTWQAAVKSQFLEAAGILPYNGFTWEHIKGTKLSGSIFDSRGTRHTSADLLQMGRPENIKVLFNPTVKSVIFRNSVL LNATVKSVIFDKGSPQILLLSGIGPKPHLNQLNIPIVLESNQVGRDVKDDPSVSIWVESNPKHQVPDLAPLAGIRKGSDFVIESLTAPFGLNGMGIGVVA AKLAFPESKVKLELNSTDPRKNPQVSYNYLESEKDMDVCVEMTQVLNEVARSRAVERFLGNVAQVNWTRNPDELRTFCRSKLRSFYHYHGGCGVGSVVGQ DYRVVGVEGLRVVDGSNFLESPGMLGRYQGIKILAERENS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012818 [exp]	0	1
AT2G27550		ATC	centroradialis (.1)		Lus10019518 [exp]	1.0	0.8015
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023620 [exp]	8.8	0.7657
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	8.9	0.7671
AT2G31085		AtCLE6, CLE6	CLAVATA3/ESR-RELATED 6 (.1)		Lus10000464 [exp]	13.0	0.7277
					Lus10021921 [exp]	18.2	0.7575
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012147 [exp]	24.7	0.7386
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10003191 [exp]	27.1	0.7834
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029812 [exp]	28.1	0.6676
AT2G17080			Arabidopsis protein of unknown...		Lus10023954 [exp]	30.2	0.7449
					Lus10010117 [exp]	43.0	0.6960

Compare expression of checked genes

Lus10012818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.