Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26800 159 / 9e-49 RING/U-box superfamily protein (.1) AT1G14200 108 / 3e-29 RING/U-box superfamily protein (.1) AT5G56340 99 / 6e-24 ATCRT1 RING/U-box superfamily protein (.1) AT3G19950 95 / 9e-23 RING/U-box superfamily protein (.1) AT3G13430 94 / 9e-23 RING/U-box superfamily protein (.1.2.3) AT1G55530 89 / 2e-20 RING/U-box superfamily protein (.1) AT5G59550 85 / 7e-19 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G26400 84 / 7e-19 RING/U-box superfamily protein (.1.2) AT2G03000 84 / 2e-18 RING/U-box superfamily protein (.1) AT3G46620 82 / 5e-18 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030464 [exp] 299 / 2e-103 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10036757 [exp] 157 / 5e-48 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10037170 [exp] 157 / 1e-47 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10002637 [exp] 98 / 1e-23 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 98 / 4e-23 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 96 / 8e-23 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10010179 [exp] 86 / 6e-20 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10040278 [exp] 74 / 9e-16 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10031422 [exp] 74 / 4e-15 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087200 [exp] 197 / 1e-63 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 195 / 1e-62 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 96 / 9e-23 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 93 / 2e-22 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 93 / 8e-22 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 89 / 5e-21 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 89 / 9e-21 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 85 / 1e-20 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 89 / 3e-20 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 85 / 3e-19 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10012819 pacid=23163004 polypeptide=Lus10012819 locus=Lus10012819.g ID=Lus10012819.BGIv1.0 annot-version=v1.0 ATGTCGTCCGATTCAGAGGTCCCAGAGCTATCAGCGCTGTTCGAGCGGCTCATGTTACGGCAGCGAGACTTCTCCATGTTCTTCCCGTTCATCCTGAGTC TAGCCAGAGCTGGATCGGAAGAAAACCCAGAAGCCGAAGAAGGAGAAGGAGAAAGAAGAAGGTCAGCTAATTCGACGGACAGAATGATCCTGATCAACCC GTTGACGCAAGGGACGGTGGTGATCGAAGGAGCAGCAGTAGGAGGGTTCGATTCACTGATCAGAGACTTGTTCTCGTCGACGGCGAGGAATGGCGGTGGG CAGCCACCGGCTTCCAAGGCTTCGATTGAAGGGCTGGAGACTGTGGAGATTAGTGAGGACTGTGGGGGAGAGTGTGTGATTTGTTTGGATGAGTGGGAGA AAGAAGGCGAGGTTGTAAAGGAGATGCCTTGTAAGCACAGGTTCCATGGCGGGTGTGTGGAGAAGTGGCTTAAGGTTCATGGGTCGTGCCCTGTTTGCAG GTTTCAGATGCCTGTTGAGGAAGAGGAGTCAGGGAAGAAAGATCAAGAAGAAGAAAGGAGGGTTGATCAGGAGATTTGGGTTAGTTTCTCTGTTGGTGGA AGGAGGAGGAGGGATTCGAATTCGGAACAGAGTGGTGATGCAGGGGATGATGCTAATGGTGGTGGTGGCAATGACAATGGTGATTCGACAAGCTTTGAGT CGATAGATTAG
AA sequence Show only first row Show all	>Lus10012819 pacid=23163004 polypeptide=Lus10012819 locus=Lus10012819.g ID=Lus10012819.BGIv1.0 annot-version=v1.0 MSSDSEVPELSALFERLMLRQRDFSMFFPFILSLARAGSEENPEAEEGEGERRRSANSTDRMILINPLTQGTVVIEGAAVGGFDSLIRDLFSSTARNGGG QPPASKASIEGLETVEISEDCGGECVICLDEWEKEGEVVKEMPCKHRFHGGCVEKWLKVHGSCPVCRFQMPVEEEESGKKDQEEERRVDQEIWVSFSVGG RRRRDSNSEQSGDAGDDANGGGGNDNGDSTSFESID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26800			RING/U-box superfamily protein...		Lus10012819 [exp]	0	1
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	6.1	0.8673
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	8.8	0.8474
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	14.0	0.8449
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	21.0	0.8249
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	29.0	0.8192
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	29.3	0.8431
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	37.0	0.8153
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10025975 [exp]	38.5	0.7854
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	43.4	0.7933
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	50.0	0.8168

Compare expression of checked genes

Lus10012819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.