Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14205 182 / 2e-59 Ribosomal L18p/L5e family protein (.1) AT1G48350 77 / 8e-18 EMB3105 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030465 [exp] 270 / 5e-94 AT1G14205 174 / 2e-56 Ribosomal L18p/L5e family protein (.1) Lus10039092 [exp] 72 / 3e-16 AT1G48350 216 / 6e-73 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) Lus10038770 [exp] 72 / 4e-16 AT1G48350 216 / 6e-73 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087100 [exp] 186 / 8e-61 AT1G14205 202 / 2e-67 Ribosomal L18p/L5e family protein (.1) Potri.010G005000 [exp] 74 / 9e-17 AT1G48350 229 / 4e-78 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10012820 pacid=23163033 polypeptide=Lus10012820 locus=Lus10012820.g ID=Lus10012820.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTGACCGTTCCCAAACCAACTCTCCATTTCAGAATTTCTACCATCTTCGTTAGCCATTTGAAGCTTTTAAATTCAAACCCCCTGCCTATCC AACTACAGAGATTCCGAGGGATGAGCTTGGTTGCGAGTTCAAGGAAGAACACCAGAACAGAGAGCGCTAAAACCCTTAACAGGAGGAGGCAACACAAGTT CAACGGGACGCCTTCGAAGCCGAGGCTGTCGGTGTTCAGTTCAGGGAAGCAGCTGTATGCAATGCTGGTGGATGATAAGAACAAGAAGAGCTTGTTCTAC GGGAGCACCTTGCAGAAGTCGATTCGTGGCGACCCGCCTTGTTCCACCATTGAAGCTGCTGAAAGATTGGGTGAGGAGGTGATCAAGGCGTGTGTCAAGC TCGAGATCGTGGAAGTGTCGTACGATCGGAATGGGAATCCGGCTCGTGGGGAGAAGATACAGGCGTTCGAGACTGTGATTTCTCGACACGGGTTCTTGCC CGATCGAGCGACTAGGTCTCGACGGGTTCCTGCCACATCGCCTTAG
AA sequence Show only first row Show all	>Lus10012820 pacid=23163033 polypeptide=Lus10012820 locus=Lus10012820.g ID=Lus10012820.BGIv1.0 annot-version=v1.0 MELLTVPKPTLHFRISTIFVSHLKLLNSNPLPIQLQRFRGMSLVASSRKNTRTESAKTLNRRRQHKFNGTPSKPRLSVFSSGKQLYAMLVDDKNKKSLFY GSTLQKSIRGDPPCSTIEAAERLGEEVIKACVKLEIVEVSYDRNGNPARGEKIQAFETVISRHGFLPDRATRSRRVPATSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	0	1
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	2.0	0.9837
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	2.8	0.9720
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	3.5	0.9776
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	5.7	0.9558
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	7.1	0.9266
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	7.3	0.9236
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	8.7	0.9731
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	9.0	0.9356
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	9.5	0.9591
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	9.8	0.9643

Compare expression of checked genes

Lus10012820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.