Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39650 220 / 4e-72 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT1G09157 219 / 4e-72 Protein of unknown function (DUF679) (.1) AT3G02430 141 / 1e-41 Protein of unknown function (DUF679) (.1) AT4G24310 132 / 2e-38 Protein of unknown function (DUF679) (.1) AT5G46090 122 / 4e-34 Protein of unknown function (DUF679) (.1) AT4G18425 120 / 2e-33 Protein of unknown function (DUF679) (.1) AT5G27370 103 / 4e-27 Protein of unknown function (DUF679) (.1) AT3G21520 91 / 3e-22 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT3G21550 87 / 6e-21 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT4G28485 83 / 8e-20 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030466 [exp] 381 / 7e-136 AT1G09157 251 / 3e-84 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 143 / 4e-42 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 142 / 1e-41 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 134 / 9e-39 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 126 / 1e-35 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 125 / 2e-35 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 124 / 7e-35 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 123 / 2e-34 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 121 / 9e-34 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087000 [exp] 289 / 2e-99 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 285 / 4e-98 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 136 / 2e-39 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 134 / 6e-39 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 132 / 4e-38 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 129 / 5e-37 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 126 / 6e-36 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 102 / 9e-27 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 94 / 2e-23 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 85 / 3e-20 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10012821 pacid=23163051 polypeptide=Lus10012821 locus=Lus10012821.g ID=Lus10012821.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTCGACTACGGAATCAAAATCTACGTCCCCCAATCTTCATCATCCGGCCGCAACAACGATCGAAAACCACCCACTTCCCCTCCGCATCCTC CACCGCCGCCATGCACATCATCATTATGTCTAACGCAAGCACCGAAGAAGCCAGGGAGCAAGAGAAGGGCAATGGCGAAAGGAGTCCAAAACACAATGTC CAAAACATCACTGCTCGTCAACTTCCTCCCGACCGGCACCCTCCTAACCTTCGAGATGCTCCTTCCGTCAATCTCGAAGAACGGCGAGTGCACCCACGTC ACTACCATGATGATCTACGTCCTATTGGGATTATGTTCCCTCTCGTGCTTCTTCTTCCACTTCACTGACAGTTTCAAGGATCCCGATGGGAAAGTTTACT ACGGGTTCGTGACGCCTAGTGGGCTGGCAGTGTTCAAGCTGGGGCTGGGGATCGATGTCCCTAAGGACGAAAAGTACAAGCTCGGGTTCACCGACTTCGT CCATGCCGCAATGTCGGTGATGGTGTTCATGGCGATCGCATTTTCGGATCATCGAGTCACGGATTGTCTGTTCCCTGGACATGTCAAGGAGATGGATGAG GTGATGGAGAGTTTCCCTCTGATGGTTGGTGTTGTTTGTAGTGGCTTGTTTTTAGTTTTTCCTACTACTAGGTATGGGATTGGGTGCAGTGCTAGTTAG
AA sequence Show only first row Show all	>Lus10012821 pacid=23163051 polypeptide=Lus10012821 locus=Lus10012821.g ID=Lus10012821.BGIv1.0 annot-version=v1.0 MEEVDYGIKIYVPQSSSSGRNNDRKPPTSPPHPPPPPCTSSLCLTQAPKKPGSKRRAMAKGVQNTMSKTSLLVNFLPTGTLLTFEMLLPSISKNGECTHV TTMMIYVLLGLCSLSCFFFHFTDSFKDPDGKVYYGFVTPSGLAVFKLGLGIDVPKDEKYKLGFTDFVHAAMSVMVFMAIAFSDHRVTDCLFPGHVKEMDE VMESFPLMVGVVCSGLFLVFPTTRYGIGCSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	0	1
					Lus10011681 [exp]	2.2	0.9685
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	2.8	0.9804
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	3.3	0.9588
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	3.5	0.9799
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10015221 [exp]	5.3	0.9689
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10042200 [exp]	7.1	0.9358
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	7.9	0.9754
AT5G55690	MADS		MADS-box transcription factor ...		Lus10007371 [exp]	9.2	0.9393
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	9.5	0.9591
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	12.3	0.9541

Compare expression of checked genes

Lus10012821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.