Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26810 828 / 0 GALT1 galactosyltransferase1 (.1) AT3G06440 508 / 1e-173 Galactosyltransferase family protein (.1.2) AT1G74800 358 / 8e-115 Galactosyltransferase family protein (.1) AT5G62620 346 / 3e-110 Galactosyltransferase family protein (.1.2) AT1G27120 339 / 1e-107 Galactosyltransferase family protein (.1) AT4G21060 321 / 1e-100 Galactosyltransferase family protein (.1.2) AT2G26100 89 / 6e-19 Galactosyltransferase family protein (.1) AT3G14960 85 / 1e-17 Galactosyltransferase family protein (.1) AT1G53290 83 / 6e-17 Galactosyltransferase family protein (.1) AT1G11730 61 / 1e-09 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030467 [exp] 1203 / 0 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 1139 / 0 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 997 / 0 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 566 / 0 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 483 / 5e-164 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 345 / 8e-110 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 338 / 4e-107 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 332 / 2e-104 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 331 / 3e-104 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168500 [exp] 1011 / 0 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 981 / 0 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 592 / 0 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 353 / 6e-113 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 348 / 4e-111 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 347 / 3e-110 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 333 / 2e-105 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 323 / 6e-102 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G228900 [exp] 84 / 4e-17 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 80 / 8e-16 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10012822 pacid=23163019 polypeptide=Lus10012822 locus=Lus10012822.g ID=Lus10012822.BGIv1.0 annot-version=v1.0 ATGAAGAAATGGTATGGAGGAGTACTTATTGCATCCCTGTTTATGGTACTGATCCTGAGATATGGTCTCTTGAAGAATCCTATTGAAGAAGGTTATCTGG TAAACTCCTTACCGAATGCAACCAATCCTCTTCAATGGGTGCAAAGTACTTTGCCATTGGCTCTTCGAAGCCCACAAAATTCTTCTCAAGCAATCTCTAC AAACACCATAGTAGTTGGTTTGTTTGCCAGGAGGAACCTTTCCAATGAGGAGAGAGTATCTTTGCACACATGGAATCTGTTGGAAGGCTTGGTTAATGGT TCACAGGCATTACCAAATGGATTGGATGCTATCAAGGAAGCCGTCAGTGCATGGAATAATCTGATGGCAACTGTCGAATCAGAGAAACTTCGTTATGCAA ATGACAGCTCGAATCGGAGAGCTAAAGAAAAACAATGTCCTCATTTTGTCAACAAACTGAACGCAACAGGACTTGACAATAATGGTTTTAGATTGCGACT GCCTTGTGGTTTGACTCAGGGATCTTCAGTCACAATAATCGGGATTCCGGAAGGTCTTCTTGGCAATTTCCGTATCGAGTTAACTGGAGAAACACTTCCT GGAGAGCCTGATCCACCTATAATATATCATTACAACGTCAGGCTAAATGGCGATAAGGTGACTGATGATCCGGTGATTGTTCAAAATACTTGGACTGCAG CTCATGATTGGGGTGATGAGGAGCGCTGTCCACCTCTGTCTCCTGAGAAAATCAAGAAAGTGGATGAGTTGGACCAATGCAACAAGGTGGTTGGTAAAAA TAGTTCAAAAAGTCACGATAATGGTCGAAGGAGGTCCGCAATGGTTCAGGATGGATTCAGATCCAGAACATATTTCCCATTTAAGCAAGGTTCTCTATCT GTCATGACACTAAGAGTTGGATCAGAGGGAATCCAGACAACAGTTGATGGAAAGCACATTACATCTTTCGCGTACCGTGAAACTTTGGAGCCATGGCTTG TTAGTGAAGTTAGGACTTCTGGAGACCTGAAGTTGATTTCTGTTCTGGCTAGTGGTCTTCCTACAGTTGAAGACTCGGAACACTCTGTAGATTTAGAAGC ACTGAAAGCATTTCCTCTCCCTACGAACCAATCGTTGGATCTCTTTATTGGCGTCTTCTCCAACGCCAATAATTTCAAACGCAGGATGGCCGTTAGAAGG ACATGGATGCAGTATACTCCTGTACGTTCAGGAGCAGTTGCAGTTCGGTTTTTTGTTGGTTTGCATAAAAACCAAATAGTAAACGCCGAACTGTGGAACG AGGCCAGAACGTACGGTGACATACAACTGATGCCTTTTGTTGACTACTACAATCTTATCACTTGGAAAACCTTAGGCATCTGTGTATTTGGGACACAAGT TGTATCGGCGAAGTATGTCATGAAGACGGATGATGATGCATTCGTTCGCGTGGACGAAGTCCTGTCTTCTTTGAAGAACATCAATGTGAATCGAGGATTG CTTTACGGGCTTATCAACTCCGATTCTCGACCGCATCGAAATGCTGATAGCAAGTGGTTCATTAGCCATGAGGAGTGGCGAGACGATAAATATCCGCCAT GGGCGCACGGTCCTGGTTATGTCATCTCTCAAGACATAGCAAAGTCAGTTTACAACAAATATAAGGAAGGTCGCTTGAAGATGTTTAAGCTTGAAGATGT AGCGATGGGAATCTGGATCAACGAAATGAAAAACGAAGGGATGAATGTCCGGTACGAGAAGGAAGAGAGGATCTGCAACACGGGATGCCGGGATGGCTAT GTTGTTGCTCACTACCAGAGTCCAAGAGATATGCTCTGCCTCTGGCAGAAGATCCAGCAAGGCAACATTGCCAAATGCTGTGGCGACCGATGA
AA sequence Show only first row Show all	>Lus10012822 pacid=23163019 polypeptide=Lus10012822 locus=Lus10012822.g ID=Lus10012822.BGIv1.0 annot-version=v1.0 MKKWYGGVLIASLFMVLILRYGLLKNPIEEGYLVNSLPNATNPLQWVQSTLPLALRSPQNSSQAISTNTIVVGLFARRNLSNEERVSLHTWNLLEGLVNG SQALPNGLDAIKEAVSAWNNLMATVESEKLRYANDSSNRRAKEKQCPHFVNKLNATGLDNNGFRLRLPCGLTQGSSVTIIGIPEGLLGNFRIELTGETLP GEPDPPIIYHYNVRLNGDKVTDDPVIVQNTWTAAHDWGDEERCPPLSPEKIKKVDELDQCNKVVGKNSSKSHDNGRRRSAMVQDGFRSRTYFPFKQGSLS VMTLRVGSEGIQTTVDGKHITSFAYRETLEPWLVSEVRTSGDLKLISVLASGLPTVEDSEHSVDLEALKAFPLPTNQSLDLFIGVFSNANNFKRRMAVRR TWMQYTPVRSGAVAVRFFVGLHKNQIVNAELWNEARTYGDIQLMPFVDYYNLITWKTLGICVFGTQVVSAKYVMKTDDDAFVRVDEVLSSLKNINVNRGL LYGLINSDSRPHRNADSKWFISHEEWRDDKYPPWAHGPGYVISQDIAKSVYNKYKEGRLKMFKLEDVAMGIWINEMKNEGMNVRYEKEERICNTGCRDGY VVAHYQSPRDMLCLWQKIQQGNIAKCCGDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10012822 [exp]	0	1
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10041360 [exp]	6.7	0.6167
AT3G09180			unknown protein		Lus10021276 [exp]	36.3	0.6329
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	38.5	0.6173
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	51.3	0.5172
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	60.2	0.5947
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	97.0	0.5651
AT3G05950			RmlC-like cupins superfamily p...		Lus10030047 [exp]	133.1	0.5031
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	153.6	0.5437

Compare expression of checked genes

Lus10012822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.