Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02990 330 / 7e-116 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G14220 291 / 1e-100 Ribonuclease T2 family protein (.1) AT1G26820 287 / 6e-99 RNS3 ribonuclease 3 (.1) AT1G14210 223 / 2e-73 Ribonuclease T2 family protein (.1) AT2G39780 126 / 2e-35 RNS2 ribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030468 [exp] 416 / 1e-149 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10027978 [exp] 288 / 3e-99 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10003110 [exp] 130 / 4e-37 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10035882 [exp] 124 / 5e-35 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10035881 [exp] 124 / 5e-35 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10041084 [exp] 105 / 5e-27 AT2G39780 306 / 2e-104 ribonuclease 2 (.1.2) Lus10036409 [exp] 87 / 3e-20 AT2G39780 276 / 5e-94 ribonuclease 2 (.1.2) Lus10022385 [exp] 82 / 4e-18 AT1G26820 92 / 2e-21 ribonuclease 3 (.1) Lus10015409 [exp] 71 / 1e-14 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086700 [exp] 345 / 6e-122 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.010G168700 [exp] 331 / 2e-116 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.008G086800 [exp] 280 / 3e-96 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.010G168600 [exp] 142 / 3e-43 AT1G26820 147 / 1e-45 ribonuclease 3 (.1) Potri.014G174400 [exp] 127 / 8e-36 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.006G118200 [exp] 80 / 1e-19 AT2G02990 86 / 3e-22 ribonuclease 1 (.1) Potri.013G134400 [exp] 85 / 3e-19 AT2G02990 82 / 4e-18 ribonuclease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [flax] [poplar] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Lus10012823 pacid=23163000 polypeptide=Lus10012823 locus=Lus10012823.g ID=Lus10012823.BGIv1.0 annot-version=v1.0 ATGACGACGATGAAGCCAGTAACCATGGACATCATCCTCCTCCAAGCTTTGGTGGCCTTGGCCCTAACGGGGCTCTCTGTTTCGAAGGATTTCGATTTCT TCTACTTCGTCCAACAGTGGCCGGGGTCGTACTGTGACACACAGAAGAGCTGTTGTTATCCGACGACCGGGAAGCCAGCTGCTGATTTTGGGATTCATGG GTTGTGGCCGAATTACAATGACGGTACTTACCCTTCAAACTGCGACTCCGGTAGCCCTTTCGTTCAGTCAAAGGTTTCTGATTTGATAAGCTCAATGCAA AAGAACTGGCCAACTCTAGCTTGCCCTAGTGGGAATGGAGTTACATTCTGGACTCACGAATGGGAGAAGCATGGCACATGCTCGGAAGATGTGTTGGATC AACATAGCTACTTTGCGAACGCTCTCAGCTTGCAAAGCCAGACTGGACTCCTCGACGCTCTAAAAAGTTCAGGAATCAAGCCAGATGGGCAATCATATAG TTTGACCGACATCAAGAGTGCGATCCATAGCAAAGTGGGATACACTCCTTATATCGAGTGCAACAACGATGAATCGGGGAAAAGTCAACTGTACCAAGTG TACTTGTGCGTGGATAGTGCCGGATCGAGTTTTATCGAGTGCCCTGTTTTTCCTCACGGGAAATGCGGCTCCGAGATCGAGTTCCCTACCTTTTAG
AA sequence Show only first row Show all	>Lus10012823 pacid=23163000 polypeptide=Lus10012823 locus=Lus10012823.g ID=Lus10012823.BGIv1.0 annot-version=v1.0 MTTMKPVTMDIILLQALVALALTGLSVSKDFDFFYFVQQWPGSYCDTQKSCCYPTTGKPAADFGIHGLWPNYNDGTYPSNCDSGSPFVQSKVSDLISSMQ KNWPTLACPSGNGVTFWTHEWEKHGTCSEDVLDQHSYFANALSLQSQTGLLDALKSSGIKPDGQSYSLTDIKSAIHSKVGYTPYIECNNDESGKSQLYQV YLCVDSAGSSFIECPVFPHGKCGSEIEFPTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10012823 [exp]	0	1
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10030468 [exp]	1.7	0.8383
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10012241 [exp]	10.6	0.7091
AT5G16910		ATCSLD2	cellulose-synthase like D2 (.1...		Lus10012119 [exp]	12.3	0.7014
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	26.2	0.7712
AT5G65010		ASN2	asparagine synthetase 2 (.1.2)		Lus10031300 [exp]	31.4	0.7883
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010989 [exp]	31.6	0.7725
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010701 [exp]	35.7	0.7722
					Lus10037862 [exp]	46.8	0.7062
AT5G10530			Concanavalin A-like lectin pro...		Lus10019234 [exp]	48.3	0.7629
					Lus10039973 [exp]	65.3	0.7023

Compare expression of checked genes

Lus10012823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.