Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02970 595 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 484 / 2e-167 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 480 / 4e-166 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 456 / 8e-157 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT4G19180 143 / 3e-36 GDA1/CD39 nucleoside phosphatase family protein (.1) AT5G18280 130 / 3e-32 ATAPY2 apyrase 2 (.1.2) AT3G04080 127 / 2e-31 ATAPY1 apyrase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030470 [exp] 1024 / 0 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030471 [exp] 615 / 0 AT2G02970 391 / 1e-133 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 145 / 2e-36 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 144 / 3e-36 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 140 / 6e-35 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10042528 [exp] 135 / 2e-33 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10027686 [exp] 133 / 4e-33 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 132 / 6e-33 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10039953 [exp] 130 / 1e-32 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086400 [exp] 662 / 0 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 639 / 0 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 338 / 4e-110 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.013G053500 [exp] 147 / 2e-38 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.004G236900 [exp] 147 / 1e-37 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031200 [exp] 143 / 3e-37 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.019G031000 [exp] 139 / 8e-36 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053700 [exp] 122 / 4e-31 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.015G079900 [exp] 119 / 3e-28 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 111 / 6e-26 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10012825 pacid=23163041 polypeptide=Lus10012825 locus=Lus10012825.g ID=Lus10012825.BGIv1.0 annot-version=v1.0 ATGGATTCCGTCAAATACCTATCTCGATCAGCTAATCATTTCCCTTACCACCCGATCCCCCGACCCGCGAACCGATCCAAATCCAACCTCGTCGTTTTCG GGCTCGTTCTGAGCTTAATTGCTTTGCTCTCCTGTTATTATCTATTCAGCACGGGGAAGGTCGTGGATTGGAATAAGAAGTACGGAGTCTTCATCGACGG AGGTAGTACTGGTACTCGGATCCATGTTTTCTCTTATACGGTGGAGAATGGGAGTCCGGTGTTTGAATTCGGAGACAAGGATACGGCGATGAGGGTCAGT CCGGGGTTGTCGGCATATTCCGATGATCCGGAATCCGGAGGGGATTCGCTGATCGAGCTGATTGAGTTTGCGAAGGAGAGAGTTCCGAGGGAGATGTGGA GGGAGACCGAAATTCGGTTGATGGCTACTGCTGGGATGAGGCTGGTGGAAGGTGATGTTCAAGGGAAGGTTATGGAAGGGTGTAGGAACGTTTTGAGGGA GTCTGGGTTCTTGTTTAGGGATGAATGGGCTTCGGTAATCAGTGGGTCTGATGAGGGTGTGTATGCTTGGGTTGTTGCGAATTACGCATTGGGGACGCTT GGAGGTGATCCTGGCGAGACGACTGGTGTAATCGAGCTTGGAGGAGCTTCTGCTCAGGTGACTTTTGTGTCGAATGAGCCGATGCCTCCTGAATTCTCAC GGATTATCAAGTTTGGAAATGCATCATACAACATCTATAGCCACAGCTTTCTTCAGTTTGGTCAGAATGTTGCATTTGACACATTGAGGGAATCACTAAT CTCAACAGGCCACCGATCACAGACATCTGACATTCATCCTCACAATACAGCTGAAGAGTCCGCTGAGAAAGGAGTAATTTTGGATCCTTGTACTCCTGCT GGGTATTCAAATGTTTTGGCTGCGGAAAGTTCTTCATCGGCTTCTTTCACCGAAAAGTGGGACCTTCTATCAAACCTTCAGCCAAAGGGCAACTTTTCCA AGTGCAGATCAGCTGCATTAACACTGTTACAGAAGGGAAAAGAGAAATGTGCCTACCAACGCTGTTCTATAGGATCAGCATTCATACCGAAGCTCAAGGG GAAGTTTTTGGCCACAGAGAATTTCTTCCATACATCTAAGTTTTTTGGATTGAGTCCGAAAGCATTCCTCTCTAAAAATCTTATGGAAGCTGGAGAACAA TTTTGCGGAGAGGATTGGTCAAACTTGAAAAGGAAGCATGGATCACTGTCTCTCAAAGACGATGACTTGATGCGTTATTGCTTCTCTTCTGCTTATATTG TCGCCCTACTCCACGACACTCTCGGGATCGCTCTAGATGATGAACGAATTGGCTGCGGTAATCATGTCGGAAATGTCCCTCTTGATTGGGCAGTCGGAGC TTTCATCTTGCTGAGCACTTCTTCACATGATACACAACAACACCAAAGCTGGATCTCCACCATCATTGGCGAAGATTCGCCTACATTGTTATCGTTAGTT GCCATTGCTGCAGTGTTCATGTTTGCAGCCTGGTCCCTCTCGAAATGGAGAAAACCCCAATTGAAGACGATCTACGATCTAGAGAAAGGACGGTATATTG TCACTCGCGTGCGAAGAAGTTCATAG
AA sequence Show only first row Show all	>Lus10012825 pacid=23163041 polypeptide=Lus10012825 locus=Lus10012825.g ID=Lus10012825.BGIv1.0 annot-version=v1.0 MDSVKYLSRSANHFPYHPIPRPANRSKSNLVVFGLVLSLIALLSCYYLFSTGKVVDWNKKYGVFIDGGSTGTRIHVFSYTVENGSPVFEFGDKDTAMRVS PGLSAYSDDPESGGDSLIELIEFAKERVPREMWRETEIRLMATAGMRLVEGDVQGKVMEGCRNVLRESGFLFRDEWASVISGSDEGVYAWVVANYALGTL GGDPGETTGVIELGGASAQVTFVSNEPMPPEFSRIIKFGNASYNIYSHSFLQFGQNVAFDTLRESLISTGHRSQTSDIHPHNTAEESAEKGVILDPCTPA GYSNVLAAESSSSASFTEKWDLLSNLQPKGNFSKCRSAALTLLQKGKEKCAYQRCSIGSAFIPKLKGKFLATENFFHTSKFFGLSPKAFLSKNLMEAGEQ FCGEDWSNLKRKHGSLSLKDDDLMRYCFSSAYIVALLHDTLGIALDDERIGCGNHVGNVPLDWAVGAFILLSTSSHDTQQHQSWISTIIGEDSPTLLSLV AIAAVFMFAAWSLSKWRKPQLKTIYDLEKGRYIVTRVRRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10012825 [exp]	0	1
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	2.6	0.9185
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	2.8	0.9105
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	3.2	0.8897
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Lus10011837 [exp]	6.6	0.8682
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	7.0	0.9028
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	7.1	0.9069
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	8.2	0.9072
AT1G56423			unknown protein		Lus10031415 [exp]	8.8	0.8893
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	9.9	0.9101
AT2G17990			unknown protein		Lus10041920 [exp]	10.1	0.9059

Compare expression of checked genes

Lus10012825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.