Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02960 250 / 9e-83 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 225 / 9e-73 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT1G14260 207 / 3e-66 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G62460 206 / 3e-65 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01275 124 / 5e-34 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 122 / 2e-33 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 99 / 8e-25 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 89 / 5e-21 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 58 / 3e-09 RING/U-box superfamily protein (.1.2) AT4G32670 57 / 8e-09 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036754 [exp] 315 / 4e-108 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10037172 [exp] 298 / 2e-101 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10019102 [exp] 244 / 3e-80 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 243 / 1e-79 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 238 / 2e-77 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 234 / 2e-76 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10004058 [exp] 139 / 9e-40 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034640 [exp] 130 / 5e-36 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 129 / 2e-35 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169200 [exp] 323 / 2e-111 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 313 / 1e-107 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.008G127400 [exp] 157 / 1e-46 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G111700 [exp] 150 / 5e-44 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G115600 [exp] 147 / 7e-43 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.013G126600 [exp] 144 / 1e-41 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.004G093500 [exp] 140 / 3e-40 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 123 / 8e-34 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.002G196600 [exp] 93 / 1e-22 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G121900 [exp] 93 / 2e-22 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10012826 pacid=23163016 polypeptide=Lus10012826 locus=Lus10012826.g ID=Lus10012826.BGIv1.0 annot-version=v1.0 ATGAGCGATCACGTGGTGCTTTTGGTGGACCGCCTCGTCGCTCAGCCTCCTCCGGCGACGGCGGCGGCGGTGACGAAAGATGGTAATGAAATTGGGGGAA TCGTCATCGACGATGTGGGTCCGTCGTGTTCTAGGTCGAATGAGGGGGAATCGGAAGAAGATGAGCCTTTGTTGATGATTGAAGATGGGGAATGTCGAAT TTGTCAGGAGGAGGATTCCGTTGAGAATCTGGAATCTCCTTGCGGCTGCAGCGGTAGCCTCAAGTATGCTCATAGGAAATGCGTGCAGCATTGGTGCAAT GAGAAAGGAGACACCATTTGTGAGATATGCCATCAGCCTTATGAACCGGGATACACTGCTCCGCCTCGTCCAGCTCTCCCCGAAGACACTGTCATCGACA TCGGTGGCGGTTGGACAATATCGGGCACGCCTATAGACCTGCGAGATCCTCGTCTCCTGGCAATTGCAGATGCAGAACGCCATTTGCTGGAAGCTGATTA TGATGAATATACTGCCTCGAATGCCAGCGGAGCTGCATTCTGCCGTTCTGCTGCTCTCATTTTGATGGCTCTTCTGCTGTTGCGACATGCTTTGACTGTT ACGGAAGCCGATGCAGATGATGATGTTTCTGCCTTCTTCTCTCTTTTCCTGCTACGAGCAGCCGGATTCCTCCTTCCATGCTACATCATGGCTTGGGCTA TCAGCATCTTGCAACGCAGAAGGCAAAGACAGGAAGCTGCAGCAATGGCAGCCACGCAGGTGGCGTTCGTCCTGCAATCTGGGCAGCGTCGAGGTCTGCA ATTCACGATTGCATCTGGTCTGCCGTCTCCTGTTACTACTACGCACCAAGAACCCGTTTGA
AA sequence Show only first row Show all	>Lus10012826 pacid=23163016 polypeptide=Lus10012826 locus=Lus10012826.g ID=Lus10012826.BGIv1.0 annot-version=v1.0 MSDHVVLLVDRLVAQPPPATAAAVTKDGNEIGGIVIDDVGPSCSRSNEGESEEDEPLLMIEDGECRICQEEDSVENLESPCGCSGSLKYAHRKCVQHWCN EKGDTICEICHQPYEPGYTAPPRPALPEDTVIDIGGGWTISGTPIDLRDPRLLAIADAERHLLEADYDEYTASNASGAAFCRSAALILMALLLLRHALTV TEADADDDVSAFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAAMAATQVAFVLQSGQRRGLQFTIASGLPSPVTTTHQEPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	0	1
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	2.8	0.8293
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	4.4	0.8733
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	5.5	0.8502
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10040659 [exp]	9.6	0.7560
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	9.9	0.8107
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	10.2	0.8427
AT5G18150			Methyltransferase-related prot...		Lus10019138 [exp]	11.8	0.8194
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	12.2	0.7830
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	13.4	0.8273
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	13.5	0.7814

Compare expression of checked genes

Lus10012826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.