Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75240 83 / 3e-19 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT2G02540 78 / 2e-17 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT4G24660 76 / 3e-17 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT3G28920 77 / 7e-17 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT1G14440 76 / 9e-17 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT5G39760 76 / 1e-16 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT5G15210 75 / 1e-16 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT1G69600 74 / 2e-16 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT5G65410 73 / 9e-16 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT5G60480 69 / 1e-14 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030473 [exp] 172 / 1e-55 AT5G39760 65 / 3e-13 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10037175 [exp] 119 / 3e-34 AT1G75240 86 / 2e-20 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10034503 [exp] 82 / 1e-20 AT3G28920 62 / 9e-13 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Lus10014302 [exp] 80 / 3e-18 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10026010 [exp] 80 / 4e-18 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10010693 [exp] 77 / 4e-18 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10007147 [exp] 79 / 1e-17 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10005244 [exp] 76 / 4e-17 AT5G39760 142 / 1e-41 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10038135 [exp] 77 / 6e-17 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169400 [exp] 101 / 8e-26 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.008G086000 [exp] 92 / 2e-22 AT5G15210 167 / 8e-50 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Potri.012G040900 [exp] 84 / 2e-20 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.015G032700 [exp] 83 / 5e-20 AT1G69600 137 / 2e-40 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.004G229600 [exp] 82 / 5e-19 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G122500 [exp] 82 / 6e-19 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.007G024100 [exp] 82 / 1e-18 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.005G227900 [exp] 81 / 2e-18 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.003G000400 [exp] 80 / 2e-18 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.017G082900 [exp] 79 / 1e-17 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012827 pacid=23163006 polypeptide=Lus10012827 locus=Lus10012827.g ID=Lus10012827.BGIv1.0 annot-version=v1.0 ATGCTCCTCGCCCTCAGCTCCGGAGCCGCGGCAGCTGCCGCCGCCGAATCAAACCCTCACCATCACCACCAACACCAGGGGCGAAATCCGGCCAACCCAA ACGAAATCGGGAGGAAGCGAGCTAGAACGAGGTTCACCACCGATCAGAAGGCTCGGATGCACGATTTCGCAGAGAGATTGGGGTGGAAGATGCTGAGAGG GAACGAGGACAGGATCGTCGAAGATTTCTGCGCCGGAATTGGAGTCCGGCGCAACGTCTTCAAAGTCTGGATGCACAACAACAAGCACAGGAAGGACAAG GCTGCCGGTAACGGTAACACTAACGGTAACGGCGACGACGGAGGACGTTTCGCTAACGGCGGTAACGGCGGCGGAGAAGATGATGATGAAGATGAAGATG AAGATGATAAGGTGAAGAATGTGAAGTACGATCTGAATAACAGCAGTATCGGCGGTAACAGTACTAGAGTTAGGTTCGATACAGATGTATTCGAGAGCAA AGTTCATGTTCTCGGCCACCATGGCGGATCTTCGCCATAG
AA sequence Show only first row Show all	>Lus10012827 pacid=23163006 polypeptide=Lus10012827 locus=Lus10012827.g ID=Lus10012827.BGIv1.0 annot-version=v1.0 MLLALSSGAAAAAAAESNPHHHHQHQGRNPANPNEIGRKRARTRFTTDQKARMHDFAERLGWKMLRGNEDRIVEDFCAGIGVRRNVFKVWMHNNKHRKDK AAGNGNTNGNGDDGGRFANGGNGGGEDDDEDEDEDDKVKNVKYDLNNSSIGGNSTRVRFDTDVFESKVHVLGHHGGSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10012827 [exp]	0	1
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	1.7	0.9656
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10036753 [exp]	5.5	0.9335
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	6.6	0.9335
AT3G58690			Protein kinase superfamily pro...		Lus10017647 [exp]	8.5	0.9387
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	9.6	0.9481
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	13.5	0.9389
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	15.1	0.9307
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	16.1	0.9078
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10015779 [exp]	16.3	0.9346
AT3G55930			Pre-mRNA-splicing factor 3 (.1...		Lus10031931 [exp]	19.4	0.9340

Compare expression of checked genes

Lus10012827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.