Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02955 66 / 4e-13 MEE12 maternal effect embryo arrest 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021646 [exp] 188 / 8e-57 AT2G02955 442 / 4e-147 maternal effect embryo arrest 12 (.1) Lus10030476 [exp] 149 / 1e-44 AT2G02955 79 / 5e-16 maternal effect embryo arrest 12 (.1) Lus10034719 [exp] 97 / 8e-24 AT2G02955 370 / 5e-121 maternal effect embryo arrest 12 (.1) Lus10004454 [exp] 96 / 1e-23 AT2G02955 204 / 8e-60 maternal effect embryo arrest 12 (.1) Lus10016253 [exp] 74 / 1e-17 AT2G02955 63 / 8e-13 maternal effect embryo arrest 12 (.1) Lus10034720 [exp] 0 / 1 AT2G02955 39 / 1e-04 maternal effect embryo arrest 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169500 [exp] 118 / 2e-31 AT2G02955 513 / 5e-174 maternal effect embryo arrest 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF11781 [flax] [poplar] zf-RRN7 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
Representative CDS sequence Show only first row Show all	>Lus10012828 pacid=23163029 polypeptide=Lus10012828 locus=Lus10012828.g ID=Lus10012828.BGIv1.0 annot-version=v1.0 ATGCTCGACAACGACGACGAAGAGACGATTGAATTCAAATGCCAATCATGCGGCGGCACCAAATTCTTCAAGAAGGACGGGTTCTACTACTGCAATTCTT GGGGCGCCATGGCCAAAGGCCTAATGGTCACCGGAACTGCCGACGACTACTGCACCGCCGGCGGCCTCTACAATAAAAAACTCAGTCACAAACTACCGAC AGCGCTCTCTCAGGGAACCCAAGCCAACCCTTCTTCTAAGTTTTGGTATCGACCCACGCAGGAGGACGATGCCCTGAATGGCCCGACGGAGCCGACGGAT TTCGGCTCGGCGGCGACCGGGAAGCTAGAGTATGAAGATTACTACAACGAGGTTAGAATTAGGTATGTTCTGGGGCTTCAGTGGATGGTTCAGATGCAGT GCGAGGCGTTGATTAACAAGCTTGGTGCTAGCCCTGCGCAGGGGCGCGAGGGATTCCGGCACGGCGGCGGCCGGGAAGCTAGAGTATGA
AA sequence Show only first row Show all	>Lus10012828 pacid=23163029 polypeptide=Lus10012828 locus=Lus10012828.g ID=Lus10012828.BGIv1.0 annot-version=v1.0 MLDNDDEETIEFKCQSCGGTKFFKKDGFYYCNSWGAMAKGLMVTGTADDYCTAGGLYNKKLSHKLPTALSQGTQANPSSKFWYRPTQEDDALNGPTEPTD FGSAATGKLEYEDYYNEVRIRYVLGLQWMVQMQCEALINKLGASPAQGREGFRHGGGREARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10012828 [exp]	0	1
AT3G44670			Disease resistance protein (TI...		Lus10037667 [exp]	12.0	0.7155
					Lus10001007 [exp]	20.8	0.7051
AT4G37810			unknown protein		Lus10011591 [exp]	21.7	0.6787
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	21.8	0.7007
AT1G01880			5'-3' exonuclease family prote...		Lus10041375 [exp]	30.6	0.6727
AT5G10310			unknown protein		Lus10025740 [exp]	31.1	0.6809
AT5G16610			unknown protein		Lus10010975 [exp]	52.4	0.6333
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	52.6	0.6465
AT5G49810		MMT	methionine S-methyltransferase...		Lus10038132 [exp]	54.3	0.6335
AT5G17510			unknown protein		Lus10024979 [exp]	61.6	0.6155

Compare expression of checked genes

Lus10012828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.