Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14280 107 / 1e-25 PKS2 phytochrome kinase substrate 2 (.1) AT2G02950 96 / 2e-21 PKS1 phytochrome kinase substrate 1 (.1) AT1G18810 46 / 2e-05 phytochrome kinase substrate-related (.1) AT5G04190 45 / 6e-05 PKS4 phytochrome kinase substrate 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030480 [exp] 594 / 0 AT2G02950 120 / 4e-30 phytochrome kinase substrate 1 (.1) Lus10037181 [exp] 272 / 5e-88 AT1G14280 140 / 2e-37 phytochrome kinase substrate 2 (.1) Lus10036746 [exp] 259 / 6e-83 AT2G02950 136 / 1e-35 phytochrome kinase substrate 1 (.1) Lus10024228 [exp] 68 / 4e-12 AT2G02950 107 / 2e-25 phytochrome kinase substrate 1 (.1) Lus10023598 [exp] 53 / 2e-07 AT2G02950 106 / 3e-25 phytochrome kinase substrate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062600 [exp] 79 / 6e-16 AT1G18810 100 / 5e-23 phytochrome kinase substrate-related (.1) Potri.007G074056 [exp] 48 / 9e-06 AT5G04190 102 / 2e-23 phytochrome kinase substrate 4 (.1) Potri.005G090000 [exp] 47 / 2e-05 AT5G04190 75 / 3e-14 phytochrome kinase substrate 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012831 pacid=23163050 polypeptide=Lus10012831 locus=Lus10012831.g ID=Lus10012831.BGIv1.0 annot-version=v1.0 ATGGCTGCTTTATCAACAAACACCATGAACAATGAAGTTTCCCTCTCCTCATACCTCAACAGATCCGAGAAGGGCAGCATTCGTCAGCTCACTGCAGAAT CCGACTTTAGTAGCATCCATACCAAGAGAGGAGACGAGAATGAGGATGAAGGGATTGTAATCTTCAGTGCAGAGAAGTACTTCAATGGGGCGATCGCCGA AGCCACGACTCCTCGACGAATTTCCTCGAGCACCCGTCAGGAGGAGAGGAAGAAGAAGGAAGACTGCAGAAAAGATGATGTTAAATCATCGCCTAGCCAT ATCCCTTCTTCTCGAACTCCAAGCTTGAAATCTGAATCAAGCTGGTACAGCCACAGTCTTCTGCTGAAAAGATCTTTCAGGAACAAGGGGAAATCGAAGT CGAAGAGCCTGATTTCTGGCCTTACCTGTAGATGTTATTGCAGTGACGAGAAATCCGTCGATGTCAAAGACGAAAAAGTGGGAGATCTTAGTTTCAGGGG AATTCAGATTCCAGAAAAGCCAATTCCTGAAAAGATTTCAGGAGCTTTGGACAAGCTGAACAAGAAGAAAGAAACCTGCTTTAGCTTTCCTGCTACTCCT GACACCGTCCTGTCAGGATTTGACGAATCGAAGCTGTTCCAAAGGTCAGTCATCAAGTCAGTGGACGTTGAACAGAGGAAGCTCCCAGCTCGGAAGTCTG AGGAACCTGATGAGTACGAAAGCGATGCAAGTTCGGACTTGTTCGAGATCGAGAGCCTGACAGGGGACAAAGTGACTTCATTTCTTGCAAGGCAAGGTTC GTGTGCCACTTCTGGATGCATCACTCCGATCTATGCTCCCAGCGAAGCGAGCATAGATTGGAGTGTGGTAACTGCAAGTGCTGCAGATTTCGGTGGACAG AGTCCTAAGATGCGGCCCCATAGAGGAAGTCTGTTGGGTTGCAAGACCAGTGAGGCTGTGAGTCCTTCTGCATACAGACTGACACAAAAAAATGCAACTA AATCTGAAGTGGGAACTCGAACTTTCAGGGCTTCAGATTCTTTTCCCAGGCCGGGATTGAGGGTCCAGCCTGATAGGAAGCTGTCAGGTTTCGATTCCAG GCACAGACAGCATCATATGGTGCATATCAATGATCACAAATTCAACAGATGA
AA sequence Show only first row Show all	>Lus10012831 pacid=23163050 polypeptide=Lus10012831 locus=Lus10012831.g ID=Lus10012831.BGIv1.0 annot-version=v1.0 MAALSTNTMNNEVSLSSYLNRSEKGSIRQLTAESDFSSIHTKRGDENEDEGIVIFSAEKYFNGAIAEATTPRRISSSTRQEERKKKEDCRKDDVKSSPSH IPSSRTPSLKSESSWYSHSLLLKRSFRNKGKSKSKSLISGLTCRCYCSDEKSVDVKDEKVGDLSFRGIQIPEKPIPEKISGALDKLNKKKETCFSFPATP DTVLSGFDESKLFQRSVIKSVDVEQRKLPARKSEEPDEYESDASSDLFEIESLTGDKVTSFLARQGSCATSGCITPIYAPSEASIDWSVVTASAADFGGQ SPKMRPHRGSLLGCKTSEAVSPSAYRLTQKNATKSEVGTRTFRASDSFPRPGLRVQPDRKLSGFDSRHRQHHMVHINDHKFNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	0	1
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	1.4	0.9925
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	2.0	0.9857
AT4G18540			unknown protein		Lus10036092 [exp]	2.8	0.9689
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	3.5	0.9856
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	3.9	0.9844
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	4.0	0.9851
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	4.2	0.9818
					Lus10041636 [exp]	4.7	0.9639
					Lus10008816 [exp]	5.9	0.9765
					Lus10006417 [exp]	6.3	0.9648

Compare expression of checked genes

Lus10012831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.