Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14290 414 / 4e-148 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 405 / 2e-144 SBH1 sphingoid base hydroxylase 1 (.1) AT2G29390 69 / 1e-13 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G07420 59 / 3e-10 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT4G12110 58 / 8e-10 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22753 59 / 1e-09 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G22756 54 / 3e-08 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT5G57800 53 / 1e-07 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030481 [exp] 535 / 0 AT1G14290 414 / 4e-148 sphingoid base hydroxylase 2 (.1) Lus10037183 [exp] 496 / 2e-180 AT1G69640 422 / 3e-151 sphingoid base hydroxylase 1 (.1) Lus10036744 [exp] 492 / 5e-179 AT1G14290 421 / 7e-151 sphingoid base hydroxylase 2 (.1) Lus10028725 [exp] 338 / 5e-118 AT1G14290 358 / 3e-126 sphingoid base hydroxylase 2 (.1) Lus10006062 [exp] 332 / 1e-115 AT1G14290 352 / 6e-124 sphingoid base hydroxylase 2 (.1) Lus10028717 [exp] 290 / 4e-99 AT1G14290 301 / 1e-103 sphingoid base hydroxylase 2 (.1) Lus10036293 [exp] 62 / 1e-12 AT1G14290 53 / 1e-09 sphingoid base hydroxylase 2 (.1) Lus10001556 [exp] 62 / 3e-11 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10006058 [exp] 62 / 4e-11 AT1G14290 75 / 6e-16 sphingoid base hydroxylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061400 [exp] 345 / 6e-121 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 333 / 4e-116 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.005G199901 [exp] 202 / 2e-66 AT1G69640 207 / 2e-68 sphingoid base hydroxylase 1 (.1) Potri.001G245300 [exp] 64 / 7e-12 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 61 / 1e-10 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.003G116000 [exp] 60 / 2e-10 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G116500 [exp] 60 / 3e-10 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 46 / 1e-05 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.017G116600 [exp] 45 / 2e-05 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.004G097500 [exp] 42 / 0.0003 AT3G02580 464 / 3e-167 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10012832 pacid=23163056 polypeptide=Lus10012832 locus=Lus10012832.g ID=Lus10012832.BGIv1.0 annot-version=v1.0 ATGGGTGGTGTCCAAATCTCGGACGAATTGCTGGGTACGTTTGTTCCGATTCTGGTCTATTGGGGCTACTCGGGGATTTATTGTCTGCTGGGGTGGTGGT GTCAGGATCACAGGCTACACACGAAGCAGGATGAAGACGAGAAGAATCTGGTCTCGAAATGGACTGTGGTTAGAGGCGTCATCTGCCAGCAAGTTGTTCA AGCTCTCGTTGCTACCCTCTTGTTCGCGGTGATGGGAAGTGACGACCAAGCTACAACGGATCAGCATCATTCCCTAAAAGTTTTAGCGGTGCAGTTCATT ACAGCAATGGTGGTCCTCGATACATGGCAGTATTTCATGCACAGGTACATGCACCAAAACAAGTTCCTCTACAAACACATCCATTCGCAACACCACCGGC TTGTGGTTCCATACGCTTACGGAGCCTTGTACAATCACCCCGTGGAAGGGCTACTCTTGGACACGATCGGTGGAGCACTATCTTTCCTGCTCTCCGGTAT GTCTCCCCGAGCCTCCATCTTCTTCTTCTCATTCGCCACTTTGAAAACAGTGGATGACCACTGCGGACTGTGGCTCCCCGGGAACCCTTTCCACTTGTTC TTCAAGAACAACACCGCTTACCACGACATTCACCACCAGTTGTATGGTACCAAGTACAACTTCTCGCAGCCCTTCTTCGTAACGTGGGACAGAATTCTAG GAACCTACATGCCTTATTCACTTGAAAAGAGACGAGGAGGGGGATTCGAAGCACGGCCTGTTAAAGATTTTAAGGATGATTGA
AA sequence Show only first row Show all	>Lus10012832 pacid=23163056 polypeptide=Lus10012832 locus=Lus10012832.g ID=Lus10012832.BGIv1.0 annot-version=v1.0 MGGVQISDELLGTFVPILVYWGYSGIYCLLGWWCQDHRLHTKQDEDEKNLVSKWTVVRGVICQQVVQALVATLLFAVMGSDDQATTDQHHSLKVLAVQFI TAMVVLDTWQYFMHRYMHQNKFLYKHIHSQHHRLVVPYAYGALYNHPVEGLLLDTIGGALSFLLSGMSPRASIFFFSFATLKTVDDHCGLWLPGNPFHLF FKNNTAYHDIHHQLYGTKYNFSQPFFVTWDRILGTYMPYSLEKRRGGGFEARPVKDFKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	0	1
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10030481 [exp]	1.0	0.9435
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10012930 [exp]	1.7	0.8328
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	3.5	0.8106
AT2G46080			unknown protein		Lus10007920 [exp]	3.5	0.8343
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10029651 [exp]	6.3	0.8192
AT4G22900			Protein of unknown function (D...		Lus10014139 [exp]	7.7	0.7541
					Lus10018551 [exp]	10.2	0.7715
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	11.2	0.8153
AT5G45840			Leucine-rich repeat protein ki...		Lus10007516 [exp]	12.7	0.7528
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	13.3	0.7801

Compare expression of checked genes

Lus10012832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.