Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11400 293 / 1e-99 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT5G06000 235 / 7e-77 ATEIF3G2, EIF3G2 ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, eukaryotic translation initiation factor 3G2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030482 [exp] 377 / 1e-132 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10028823 [exp] 360 / 6e-126 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10017459 [exp] 347 / 5e-121 AT3G11400 447 / 3e-160 eukaryotic translation initiation factor 3G1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060000 [exp] 326 / 1e-112 AT3G11400 422 / 5e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.010G199000 [exp] 315 / 2e-108 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF12353 [flax] [poplar] eIF3g Eukaryotic translation initiation factor 3 subunit G
Representative CDS sequence Show only first row Show all	>Lus10012833 pacid=23163059 polypeptide=Lus10012833 locus=Lus10012833.g ID=Lus10012833.BGIv1.0 annot-version=v1.0 ATGACGGTAGACACAGCTGCACCGAGCAAGCTCCGATGGGGAGAATTGGAGGATGACGGCGAGGATCTGGACTTTCTGTTGCCTCCGAAGGAGGTGATAG GACCCGATCACAACGGGATCAAGAGAGTGATCGAGTACAAATTCAACGACGATGGCGATAAGGTCAAGATTACGACAACTACTCGCGTCAGGAAGCTGGC CAACGCCCGCCTGAGTCGACGTGCCGTTGAGCGGAGGAGTTGGGCCAAGTTCGGCGACGCTGTTCATGAGGATGTCGGTGCTCGCCTCACCATGGTCTCC ACTGAGGAGATCCTGCTTGAACGACCTAGGGCTCCAGGTACCAAAGCTGAAGAAAGCAAGATGGGTGGAGATAACTTGTCACAGCTTGGAAAGGCAGGAG CTGTACTGATGCTTTGCAGAACCTGCGGCAAGAAGGGAGATCACTGGACATCAAGGTGTCCATACAAGGATCTCGCTGCTCCTACCGAATCATTCATCGA CAAGCCCCCAATATCCGATTCTTCTGCTGCCGGTGGTCCTGCTGCTCCTGGCAAGGCTTCTTACGTGCCGCCAAGCATGAGGCCAGGGGCAGAGAGGAGC GTTGGATCGGATATGAGGAGAAGGAACGACGAGAACTCTGTTCGTGTCACTAACTTGTCTGAGGATACCCGCGAGCAGGACATGAAGGAAGAAAAAAAAA CCATTCGGTCACGTGACCCGTACTTACGTTGCCATCGATCAGAAGACTGGCGTGAGCAGAGGCTTTGGTTTCGTCAACTTTGCGAACAAGGAGGATGCTG A
AA sequence Show only first row Show all	>Lus10012833 pacid=23163059 polypeptide=Lus10012833 locus=Lus10012833.g ID=Lus10012833.BGIv1.0 annot-version=v1.0 MTVDTAAPSKLRWGELEDDGEDLDFLLPPKEVIGPDHNGIKRVIEYKFNDDGDKVKITTTTRVRKLANARLSRRAVERRSWAKFGDAVHEDVGARLTMVS TEEILLERPRAPGTKAEESKMGGDNLSQLGKAGAVLMLCRTCGKKGDHWTSRCPYKDLAAPTESFIDKPPISDSSAAGGPAAPGKASYVPPSMRPGAERS VGSDMRRRNDENSVRVTNLSEDTREQDMKEEKKTIRSRDPYLRCHRSEDWREQRLWFRQLCEQGGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	0	1
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	1.4	0.9702
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	3.5	0.9652
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	3.5	0.9484
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	4.2	0.9525
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	4.5	0.9684
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10011251 [exp]	5.8	0.9356
AT2G47790			Transducin/WD40 repeat-like su...		Lus10001029 [exp]	6.9	0.9526
AT3G01790			Ribosomal protein L13 family p...		Lus10032063 [exp]	6.9	0.9469
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	7.1	0.9597
AT2G04390			Ribosomal S17 family protein (...		Lus10029412 [exp]	8.1	0.9418

Compare expression of checked genes

Lus10012833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.