Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57550 287 / 4e-97 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G25810 284 / 8e-96 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57560 277 / 4e-93 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G30270 255 / 1e-84 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57540 248 / 1e-81 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT5G57530 247 / 2e-81 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT4G25820 246 / 3e-81 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT2G18800 244 / 7e-80 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT4G14130 241 / 5e-79 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 240 / 2e-78 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030484 [exp] 390 / 1e-137 AT4G25810 398 / 9e-141 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Lus10010938 [exp] 248 / 8e-82 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031392 [exp] 247 / 3e-81 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 246 / 7e-81 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 246 / 8e-81 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 241 / 5e-79 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10000678 [exp] 236 / 4e-77 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 234 / 2e-76 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 234 / 2e-76 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094800 [exp] 287 / 5e-97 AT4G25810 413 / 1e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 286 / 7e-96 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.005G007200 [exp] 279 / 6e-94 AT4G25810 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 277 / 5e-93 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 273 / 1e-91 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G071200 [exp] 266 / 7e-89 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G094900 [exp] 265 / 2e-88 AT4G25810 410 / 8e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.002G060500 [exp] 253 / 2e-83 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 252 / 2e-83 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 251 / 4e-83 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10012834 pacid=23163025 polypeptide=Lus10012834 locus=Lus10012834.g ID=Lus10012834.BGIv1.0 annot-version=v1.0 ATGGCGACTCCCACCTCCAACACCCCTTTCCTACTCCTCTCAATCACCCTCATCATCTCTGCCACCGCCACCTTTGCGGCCCAGACCGATCTGGGCCGCG AATTCGACCTCACGTGGGGAGAAGGCCGCGGTAAGATCGTTGCTGACGGCCAGCTCCTCACCCTGACCCTCGACCACACGTCCGGATCAGGGTTCCAGTC CAAGAACAAGTACCTATACGGGAAGCTCGACATGCAGCTCAAGCTCGTCCCCGGCAACTCCGCCGGCACGGTCACTGCTTACTTTGTAATAAAGACTGAA TCTTCTCTCCACTTTTTGCCATGGATTTGCAAAAAGATTGCATCTTTTCTTCATTTCTGCCATGAACTTGCAGAAAGATTGTTGAAGTCTGATGGAGGTG CGTGGGACGAGATTGACTATGAGTTCTTGGGGAACTTGAGTGGCGATCCTTATACGGTTCATACAAACGTATTCACAAACGGGAAAGGCGACCGGGAGCA GCAGTTTCGTCTTTGGTTCGATCCAACGACTGATTTTCATACTTATTCCATCCTTTGGAACCCCAAGAGCATCGTGGAGAGTAGAGTCAATTGGTTAGTA GTCCAAGTTGGTAGTACAGTTGGTAGGGACTGGTCACAGGCTCCGTTCTCAGCCTCCTACAAAGACTTTAGAGCAGGGGAGGCCTGCATATGGAAGGACG GCGAAGCGACGTCGTCTTGCTCTCCAGCGGGTAGCACGTCGTGGCTGAGCGAGCAGCTGAACTCGGTGAATGAGCAGCGGATGAGGTGGGTCCAGAGCCA TTACATGATCTACAACTACTGTACTGATTCCAAGAGGTTCCCTCAAGGGTTCCCTAAAGAGTGCGGTGTAGAATAA
AA sequence Show only first row Show all	>Lus10012834 pacid=23163025 polypeptide=Lus10012834 locus=Lus10012834.g ID=Lus10012834.BGIv1.0 annot-version=v1.0 MATPTSNTPFLLLSITLIISATATFAAQTDLGREFDLTWGEGRGKIVADGQLLTLTLDHTSGSGFQSKNKYLYGKLDMQLKLVPGNSAGTVTAYFVIKTE SSLHFLPWICKKIASFLHFCHELAERLLKSDGGAWDEIDYEFLGNLSGDPYTVHTNVFTNGKGDREQQFRLWFDPTTDFHTYSILWNPKSIVESRVNWLV VQVGSTVGRDWSQAPFSASYKDFRAGEACIWKDGEATSSCSPAGSTSWLSEQLNSVNEQRMRWVQSHYMIYNYCTDSKRFPQGFPKECGVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57550		XTR3, XTH25, EX...	xyloglucan endotransglycosylas...		Lus10012834 [exp]	0	1
AT1G44224			ECA1 gametogenesis related fam...		Lus10018644 [exp]	1.4	0.6861
AT4G23210		HIG1, CRK13	cysteine-rich RLK (RECEPTOR-li...		Lus10003735 [exp]	18.0	0.6277
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	28.8	0.6623
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10041259 [exp]	31.4	0.6010
AT2G27710			60S acidic ribosomal protein f...		Lus10019846 [exp]	45.4	0.6434
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006179 [exp]	70.8	0.5559
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012547 [exp]	90.6	0.5871
AT3G22640		PAP85	cupin family protein (.1)		Lus10042617 [exp]	117.2	0.5442
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	117.7	0.5622
AT1G51410			NAD(P)-binding Rossmann-fold s...		Lus10009955 [exp]	137.7	0.4918

Compare expression of checked genes

Lus10012834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.