Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26830 1320 / 0 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 1310 / 0 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 515 / 9e-173 CUL4, ATCUL4 cullin4 (.1) AT4G02570 421 / 3e-137 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 388 / 3e-124 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 359 / 2e-113 Cullin family protein (.1) AT1G59790 119 / 5e-29 Cullin family protein (.1) AT1G59800 94 / 4e-21 Cullin family protein (.1) AT4G12100 72 / 6e-13 Cullin family protein (.1) AT3G46910 66 / 9e-12 Cullin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030485 [exp] 1508 / 0 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10036739 [exp] 1447 / 0 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 1444 / 0 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 446 / 1e-147 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10032200 [exp] 420 / 1e-136 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 419 / 3e-136 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 406 / 4e-131 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 403 / 5e-130 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10038504 [exp] 393 / 2e-128 AT5G46210 913 / 0.0 cullin4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093200 [exp] 1410 / 0 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.008G148300 [exp] 1407 / 0 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 520 / 1e-174 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 511 / 8e-171 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217300 [exp] 428 / 1e-139 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 426 / 9e-139 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 417 / 1e-135 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 413 / 4e-134 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 64 / 7e-12 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.013G020000 [exp] 63 / 2e-10 AT4G02570 172 / 2e-48 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF10557 [flax] [poplar] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Lus10012835 pacid=23162990 polypeptide=Lus10012835 locus=Lus10012835.g ID=Lus10012835.BGIv1.0 annot-version=v1.0 ATGAGTAACCAGAAGAAGAGGAGCTTCCACATAGAGGCGTTCAAGCACCGGGTGGTGGTGGATCCGAAATACGCAGACAAGACCTGGAAGGTCCTCGAGC ATGCTATCCACGAGATATACAACCACAACGCCAGTGGCCTCAGCTTCGAGGAGCTCTACAGGAATGCATACAATATGGTTCTGCACAAATTTGGCGAGAA ATTGTACTGTGGCCTGGTTTCGACCATGACTTCACATTTAAAGGAGATATCAACATCTATTGAGGCTGCGCAGGGAGATTCCTTTTTAGAGGAGCTGAAC AGGAAGTGGAATGATCACAACAAAGCGCTTCAAATGATCAGGGACATATTGATGTATATGGATAGAACTTACATTCCGAGCACTCACAAGACTCCAGTTC ACGAGCTTGGTCTCAACTTGTGGAGGGATAATATTATCAACTCTAGCAATATTCAGATCAGGCTGTTGAATACGCTTCTTGAGTTAGTCCGTAGGGAGAG AACTGGTGATGTCATAGACCGTGGTCTTATGAGGAACATAATCAAGATGCTGATGGATTTGGGTGCTGTAGTTTACCAGGAGAACTTTGAGAAGCATTTT CTTGACGTTTCGGCTGAGTTTTACATGGTTGAGTCTCAGCACTTCATTGAATGCTGTGACTGTGGCGAGTATCTGAAGAAAGCTGAGAAGCGGTTGAATG AAGAGATAGAGAGGGTGACACACTACTTGGATACAAAGAGTGAGGCCAAGATAACTAATGTGGTCGAGAAGGAGATGATTGCCAATCATATGCTGAGGCT CGTCCACATGGAAAATTCAGGTTTGGTGAACATGCTTCTTGATGATAAGTATGAGGACTTGGGAAGAATGTATAATTTGTTCCGTCGAGTTCCCAATGGT CTCTCAACAATCAGGGATGTCATGACTTCTCATCTCAGAGAAACTGGGAAGCAACTTGTCACTGATCCAGAAAGGTTGAAAGATCCGGTGGATTTTGTGC AGCGTTTGTTGGACGAGAAAGACAAGTACGATGCCATCATAAACAAGGCCTTCATCAATGACAAGACATTCCAGAATGCGTTGACCAAGTCGTTTGAATA TTTCATCAACTTGAATGCTCGTTCTCCTGAATACATCTCATTGTTTGTCGATGACAAACTGAGGAAGGGGCTTAAGGGAGTTAGTGAAGAAGATGTTGAG ATTATTCTGGACAAAGTAATGATGCTGTTCCGGTACTTGCAGGAGAAAGACGTATTTGAAAAGTACTACAAACAGCACTTAGCCAAGAGACTTCTATCGG GGAAAACTGTGTCGGATGATGCAGAGAGAAGTCTGATAGTGAAACTCAAGACTGAATGTGGCTACCAATTCACTTCGAAGCTAGAAGGTATGTTTACAGA CATGAAGACGTCTCAGGATACGATGCATGGGTTTTATTCGAGCCATCCCGAGCTAGGAGATGGGCCAACCCTCGTTGTTCAGGTCTTGACTACTGGGTCT TGGCCGACCCAGCCGAGTGTCACTTGCAACTTACCTTCTGAAATGTCGGTACTTTGTGAGAAGTTCAGGTCATATTACCTCGGAACTCACACCGGTAGGA GGTTGTCATGGCAGACTAACATGGGCAACGCTGATCTTAAGGCGACTTTCGGGAAGGGTCAGAAGCATGAGCTGAACGTTTCGACTTATCAAATGTGTGT TCTCATGCTGTTTAACAACGCTGATCGCCTTACTTATAAAGAGATCGAGCAGGCGACGGAGATCCCGGCCCCTGAACTGAAGAGGTGCTTGCAGTCCATG GCTTGCGTGAAAGGCAAGAACGTCCTCCGTAAAGAGCCTATGAGCAAAGACATCGGCGAGGAGGATGCTTTCTTCATCAACGACAAATTTTCGAGCAAGT TTTACAAGGTGAAGATAGGAACGGTAGTCGCACAGAAGGAATCGGAACCCGAGAAGCAAGAGACACGGCAGAGGGTGGAAGAGGACAGGAAGCCTCAGAT CGAAGCTGCATTAGTTAGAATCATGAAGTCAAGGAGGGTACTAGATCATAATAACTTAATCAGCGAGGTGACGAAGCAACTACAGCAACGGTTCTTACCC AATCCGACCGAAATCAAGAAGCGAATCGAGTCACTCATAGAGCGCGATTTCTTGGAGAGGGATAACGTCGACAGAAAATTGTACCGATATCTTGCATAG
AA sequence Show only first row Show all	>Lus10012835 pacid=23162990 polypeptide=Lus10012835 locus=Lus10012835.g ID=Lus10012835.BGIv1.0 annot-version=v1.0 MSNQKKRSFHIEAFKHRVVVDPKYADKTWKVLEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYCGLVSTMTSHLKEISTSIEAAQGDSFLEELN RKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIINSSNIQIRLLNTLLELVRRERTGDVIDRGLMRNIIKMLMDLGAVVYQENFEKHF LDVSAEFYMVESQHFIECCDCGEYLKKAEKRLNEEIERVTHYLDTKSEAKITNVVEKEMIANHMLRLVHMENSGLVNMLLDDKYEDLGRMYNLFRRVPNG LSTIRDVMTSHLRETGKQLVTDPERLKDPVDFVQRLLDEKDKYDAIINKAFINDKTFQNALTKSFEYFINLNARSPEYISLFVDDKLRKGLKGVSEEDVE IILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHGFYSSHPELGDGPTLVVQVLTTGS WPTQPSVTCNLPSEMSVLCEKFRSYYLGTHTGRRLSWQTNMGNADLKATFGKGQKHELNVSTYQMCVLMLFNNADRLTYKEIEQATEIPAPELKRCLQSM ACVKGKNVLRKEPMSKDIGEEDAFFINDKFSSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAALVRIMKSRRVLDHNNLISEVTKQLQQRFLP NPTEIKKRIESLIERDFLERDNVDRKLYRYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	1.0	0.9073
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	1.4	0.8320
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	2.2	0.7995
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10021798 [exp]	3.6	0.7695
AT3G16270			ENTH/VHS family protein (.1)		Lus10038289 [exp]	4.0	0.8017
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	4.2	0.8190
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10011116 [exp]	5.2	0.7768
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	5.7	0.7771
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	6.9	0.7649
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	8.8	0.7820

Compare expression of checked genes

Lus10012835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.