Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47590 350 / 7e-121 alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 343 / 7e-119 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29840 339 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) AT5G11910 306 / 7e-104 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G19550 295 / 5e-99 alpha/beta-Hydrolases superfamily protein (.1) AT1G29830 66 / 1e-11 Magnesium transporter CorA-like family protein (.1.2.3) AT2G39400 49 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G17150 48 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14290 42 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013517 [exp] 318 / 5e-109 AT5G11910 351 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001114 [exp] 47 / 2e-05 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 44 / 0.0001 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 44 / 0.0002 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 44 / 0.0002 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 42 / 0.0005 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068000 [exp] 374 / 3e-130 AT3G47590 360 / 4e-125 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G032500 [exp] 349 / 4e-121 AT3G47590 347 / 9e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G227900 [exp] 339 / 4e-117 AT5G11910 363 / 5e-127 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G000700 [exp] 43 / 0.0002 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G001000 [exp] 41 / 0.0007 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33 CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10012836 pacid=23163057 polypeptide=Lus10012836 locus=Lus10012836.g ID=Lus10012836.BGIv1.0 annot-version=v1.0 ATGGCGACCACTAGCGTGTTTCTTTGCGATTCATTAGTTGAGCTATTCCTTCCCAAAAAACCTACTCATTTCTCACTCTCTCCCCGTCCTCGGCAGGTAC ACTTGTCCTTCTCCTCTCCTTCATCACCCCGCCGCCGCAAATCCGCTTCTGCTTCTATCAGCATCATGGCTCAACCCGCCCAATCCCCAGTGGTGATGCA GAAGAGAGTGATTATACCAAACAAGCACGGAGAGAAACTGGTGGGACTGTTCCATGATTGTGGGTCTAAGGAAGTTGTTGTCTTGTGCCATGGATTTCAA TCCTCAAAGGATTACAGAACCATGAAAAACCTTGCTGCTGCACTTGAGAAGGAAGGAATCTCAGCCTTCCGATTTGACTTTGCTGGCAATGGGGAAAGTG AAGGCTCATTTGCTTATGGTAACTACAAGAGAGAAGCTGATGATCTGCGCTCTGTGGTCGAGCATTTTGAGGGAGAGAACCGGGTTGTTAACGTGGTTCT TGGACATAGTAAAGGAGGTGGCGCGGTGCTACTGTATGCTTCGAAATACCACGACATAAAGAACGTCGTGAACGTTTCCGGGCGTCATGACCTGAAGAGA GGAATCGAGGCTCGTCTTGGGAAAGACTTCCTGGAAAGAATCAAGAAAGAAGGATCCATATCCATTGATATCAAGAATCGAGCAGGAGAGGTGGTTAAGT TTCCAGTCACGGAAAAGGATTTGTACGATCGAATCAATACCGATATGCATGAAGCATGCCAGAAAATAGATCAAACTTGCAATGTGTTGACCATCCATGG ATCTGCTGACGAGACTGTACCGGTGGAGGATGCATTGGAGTTCGCGAAGGTTATACCGAACCACAAGCTACACATAGTGGAAGGAGCTGATCATGGATTC AGCTCTCATCAACCGGAGCTAGCATCGTTGGTTATCGAGTTTGTGAAATCAAGTCTGCTGCAGGATTGA
AA sequence Show only first row Show all	>Lus10012836 pacid=23163057 polypeptide=Lus10012836 locus=Lus10012836.g ID=Lus10012836.BGIv1.0 annot-version=v1.0 MATTSVFLCDSLVELFLPKKPTHFSLSPRPRQVHLSFSSPSSPRRRKSASASISIMAQPAQSPVVMQKRVIIPNKHGEKLVGLFHDCGSKEVVVLCHGFQ SSKDYRTMKNLAAALEKEGISAFRFDFAGNGESEGSFAYGNYKREADDLRSVVEHFEGENRVVNVVLGHSKGGGAVLLYASKYHDIKNVVNVSGRHDLKR GIEARLGKDFLERIKKEGSISIDIKNRAGEVVKFPVTEKDLYDRINTDMHEACQKIDQTCNVLTIHGSADETVPVEDALEFAKVIPNHKLHIVEGADHGF SSHQPELASLVIEFVKSSLLQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47590			alpha/beta-Hydrolases superfam...		Lus10012836 [exp]	0	1
AT2G46910			Plastid-lipid associated prote...		Lus10036340 [exp]	3.2	0.8318
AT1G27385			unknown protein		Lus10037024 [exp]	9.1	0.8716
AT5G24314		PDE225, PTAC7	PIGMENT DEFECTIVE 225, plastid...		Lus10041454 [exp]	24.1	0.8179
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	25.7	0.8296
					Lus10027957 [exp]	25.9	0.8023
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10021496 [exp]	34.0	0.8241
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10041564 [exp]	35.2	0.8158
					Lus10008816 [exp]	35.9	0.8183
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	39.4	0.7064
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	39.9	0.7727

Compare expression of checked genes

Lus10012836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.