Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69680 295 / 1e-102 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G049900 [exp] 268 / 4e-92 AT1G69680 259 / 1e-88 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.019G023800 [exp] 0 / 1 AT1G69680 0 / 1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF04603 [flax] [poplar] Mog1 Ran-interacting Mog1 protein
Representative CDS sequence Show only first row Show all	>Lus10012837 pacid=23162978 polypeptide=Lus10012837 locus=Lus10012837.g ID=Lus10012837.BGIv1.0 annot-version=v1.0 ATGGCGACGGATTCCTACTCTGAGAGAGCCTTGTACGGCGGCGCAATCTCCAGCTCCTTCCCTCTCCGATTCCAGGATGTGAGCAATGTTCGTCAAGTTC CTGATCACCAGGAAGCATTTGTGGATCCTGCAAGGGATGAGAGCTTAGTGTTCGAGCTATTGGAGCTGAAGAATGAAGTTGGAGATAATGGAAGTGCTGC TTGGTTTCTTCAGGATCTTGTCACTGAGCAAGATGGTGAAGGATTCACTCTAATGGAGCAATCTGGAGTGCTCGAGGTTCCGGGTTTACGATACAGGAAC CTTCCTGTCACTATCTCCACTGCAGTTGGCCAAATGGCGGTCTCGAAGGGACGACAAGGAAGGGAAGCTCAGAACATTGTGAAGGTTTACTTGGCAAACT TGAGACTCAAGGAAGTCGGTACAGATATGCTCATAACTGCATACGAACCGGTTCTGATAAATCCGTCCAGTGAAAGCGCAAGTGCAGTTGGTGCCGGCCT AGCGACTCCTGCTGCGCTATCCGGAATCGTACCGATGGCTGATGTATTCAAAGCTGCTGTCACTTCCTTCAAAGTGAATGATTGGAGCCTCTTTGGTGCT TCTTCTTAG
AA sequence Show only first row Show all	>Lus10012837 pacid=23162978 polypeptide=Lus10012837 locus=Lus10012837.g ID=Lus10012837.BGIv1.0 annot-version=v1.0 MATDSYSERALYGGAISSSFPLRFQDVSNVRQVPDHQEAFVDPARDESLVFELLELKNEVGDNGSAAWFLQDLVTEQDGEGFTLMEQSGVLEVPGLRYRN LPVTISTAVGQMAVSKGRQGREAQNIVKVYLANLRLKEVGTDMLITAYEPVLINPSSESASAVGAGLATPAALSGIVPMADVFKAAVTSFKVNDWSLFGA SS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Lus10012837 [exp]	0	1
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	2.8	0.7995
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	6.6	0.7914
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	10.4	0.7828
AT5G51840			unknown protein		Lus10031667 [exp]	11.9	0.7119
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	12.0	0.8051
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	12.7	0.7691
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	13.9	0.7868
AT5G65490			unknown protein		Lus10002654 [exp]	17.3	0.7910
AT2G29900		PS2	Presenilin-2 (.1)		Lus10035137 [exp]	20.7	0.7888
AT4G35540			zinc ion binding;transcription...		Lus10014847 [exp]	21.4	0.7563

Compare expression of checked genes

Lus10012837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.