Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02880 343 / 7e-118 mucin-related (.1) AT5G62270 96 / 6e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030486 [exp] 594 / 0 AT2G02880 347 / 7e-120 mucin-related (.1) Lus10034311 [exp] 112 / 3e-28 AT5G62270 447 / 3e-157 unknown protein Lus10035022 [exp] 112 / 4e-28 AT5G62270 425 / 6e-149 unknown protein Lus10021682 [exp] 111 / 1e-27 AT5G62270 425 / 7e-149 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004400 [exp] 362 / 1e-125 AT2G02880 335 / 1e-115 mucin-related (.1) Potri.012G021000 [exp] 164 / 4e-50 AT2G02880 161 / 6e-50 mucin-related (.1) Potri.007G133900 [exp] 97 / 3e-22 AT5G62270 365 / 3e-124 unknown protein Potri.017G017901 [exp] 47 / 7e-06 AT5G62270 241 / 7e-77 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012838 pacid=23162992 polypeptide=Lus10012838 locus=Lus10012838.g ID=Lus10012838.BGIv1.0 annot-version=v1.0 ATGCAATTTCTCAATCGGATTGCAGGTTTCTCTGCTAAGGAAGCTAATTTAGCTAGATATGGACATGGGTTTGGAAGTCAGAATCACGGTTCGAGTTTAG CTGCTTTGGTTTCGAGGTATCTATCAACTAGTAGCGCTGGCGGCGGCGGAGGAGGTGGTGGAAGGAAAAGAGGAGGAAATGATGATGAATGGAACGATGC GTGGGAGACTGCTTGGCTACCGGATGATCTAAAGGGGAAAGACCGAGCTCCATGGGAAACGGACGTGAACTTTCCGTCAACGGCGACGGTAGTGGTCCCG CCGTCGGAGCTGGACTCGGAGACGAAAGCGTTCGTGGAGGAGATGAACGAGAATTGGGATCAACGGCGAAGAACGGCAAACAACAAGAAGGTTGAAGATG GAGCGGAGAAGAATAACGGTCTGTATAGTTTAGAGAATATGAAGAAGGATTACAGGTTGAAGAAGCAGAGGATCCATGCTGGATTATGGGCTAAGGAGAT CGAGAAGATGCAGGAGTCGAAATCAGGAGTCGCCGGTGGCGGCGTTGATGATATCGATCGTTTGCTCGATAGTTACTCAGAGATTTTCGACACGAATAAT GCTGACCTGGATGACCCGAAGGTGCCGAGTTCATCTTCGGAGCTTAAGAACAAGCCAGACGGGTGGGAAACTACGTCGAAAGCTCCGGACGGGAATGTAT GGGACATGTCACAGAGGGAAGAGGACATTCTGCATCAAGAATTTGATAGACGAATTGCCTTCTGCAAATTCCAGATAGCAAGCTTTATAAAGAGTCATAT CTTCAGCAGGAGAAGACCGATTGACGGATGGAAGTACATGATCGAAGTAGTAGGGCCGAATTCCAGGAAAGGGAAAGGCAGTGTTTCAAGAATTGCAGCT CTATCGGATCCATCGACTCAGCCGTTCAAAGAAGAGAAGACGAATTCGCGCAGCAGCAGCTTCGAACATTCGAAGAAGAGACATCAGTTCACCGCCTGA
AA sequence Show only first row Show all	>Lus10012838 pacid=23162992 polypeptide=Lus10012838 locus=Lus10012838.g ID=Lus10012838.BGIv1.0 annot-version=v1.0 MQFLNRIAGFSAKEANLARYGHGFGSQNHGSSLAALVSRYLSTSSAGGGGGGGGRKRGGNDDEWNDAWETAWLPDDLKGKDRAPWETDVNFPSTATVVVP PSELDSETKAFVEEMNENWDQRRRTANNKKVEDGAEKNNGLYSLENMKKDYRLKKQRIHAGLWAKEIEKMQESKSGVAGGGVDDIDRLLDSYSEIFDTNN ADLDDPKVPSSSSELKNKPDGWETTSKAPDGNVWDMSQREEDILHQEFDRRIAFCKFQIASFIKSHIFSRRRPIDGWKYMIEVVGPNSRKGKGSVSRIAA LSDPSTQPFKEEKTNSRSSSFEHSKKRHQFTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02880			mucin-related (.1)		Lus10012838 [exp]	0	1
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	1.4	0.8803
AT5G53045			unknown protein		Lus10017942 [exp]	1.7	0.8859
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	6.0	0.8455
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	6.5	0.8109
					Lus10034896 [exp]	8.6	0.7798
AT1G17030			unknown protein		Lus10024442 [exp]	10.0	0.8232
AT5G11500			unknown protein		Lus10038625 [exp]	11.0	0.8295
AT2G28430			unknown protein		Lus10022580 [exp]	11.5	0.7943
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	13.6	0.8347
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	15.7	0.7522

Compare expression of checked genes

Lus10012838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.