Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26920 79 / 1e-18 unknown protein AT1G69760 66 / 9e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030488 [exp] 197 / 3e-65 AT1G26920 94 / 2e-24 unknown protein Lus10037195 [exp] 97 / 2e-25 AT1G26920 106 / 2e-29 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012840 pacid=23162985 polypeptide=Lus10012840 locus=Lus10012840.g ID=Lus10012840.BGIv1.0 annot-version=v1.0 ATGGCGGATACCACCCTAAAACGGCCGAGGGAAGACTCCGACGAGTCTGGAAACAAACGCCAGAAACCCTATAACGACGGAAACTCCATACTATCATCCT TCCTTGACCAAGGAGAAGAAGAGCCAATCCAAGACTTGTCCTCTTTCCTCTCATCCATCCAAGAGGAGCTCTCCTCTCCGGGACCGGTGCCGGAGAATCA TGACTCCTCCTCCTCATCCTCCACCACCTTCGAGGACTACGACTATGACTACGCATCTTCGTCGAGTAATGTTGAGGAGGGGGAGGAGAGGGAGAGAGTC ATCCGACACCTTCTCGAGGCGTCGGATGACGAGCTGGGGATACCGACGACGGTGGATAACGGGGAGATTGGGGTGGTGACGGAGGCGGTGACGGCGGTGG AGGAGGGAGATGGGTTTGGGATTAATTATGATGGGTTGTGGGAGTTTGAGGATTTGAATGCAAACTATTATACATTGTTGCAGTCTGAATTGTTCATGTG A
AA sequence Show only first row Show all	>Lus10012840 pacid=23162985 polypeptide=Lus10012840 locus=Lus10012840.g ID=Lus10012840.BGIv1.0 annot-version=v1.0 MADTTLKRPREDSDESGNKRQKPYNDGNSILSSFLDQGEEEPIQDLSSFLSSIQEELSSPGPVPENHDSSSSSSTTFEDYDYDYASSSSNVEEGEERERV IRHLLEASDDELGIPTTVDNGEIGVVTEAVTAVEEGDGFGINYDGLWEFEDLNANYYTLLQSELFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26920			unknown protein		Lus10012840 [exp]	0	1
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001711 [exp]	3.5	0.7928
					Lus10010492 [exp]	5.4	0.8003
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	8.5	0.7604
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	11.6	0.7837
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	12.0	0.7836
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	12.0	0.7763
AT1G52342			unknown protein		Lus10043217 [exp]	12.4	0.7655
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	14.1	0.6958
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	15.9	0.7708
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	17.3	0.7281

Compare expression of checked genes

Lus10012840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.