Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02870 541 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 527 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 509 / 3e-180 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 466 / 9e-163 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 322 / 4e-107 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 224 / 1e-68 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 197 / 1e-58 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 94 / 5e-21 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 92 / 2e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 84 / 3e-17 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030489 [exp] 808 / 0 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10036735 [exp] 656 / 0 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037196 [exp] 565 / 0 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10023608 [exp] 364 / 2e-123 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 355 / 4e-120 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 353 / 2e-119 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024239 [exp] 147 / 1e-40 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 98 / 1e-21 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 91 / 2e-19 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063200 [exp] 517 / 0 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.019G042100 [exp] 381 / 3e-129 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 375 / 7e-127 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G331500 [exp] 236 / 3e-73 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 223 / 5e-68 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 108 / 5e-26 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 94 / 5e-21 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 92 / 2e-20 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 93 / 3e-20 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 92 / 4e-20 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10012841 pacid=23162968 polypeptide=Lus10012841 locus=Lus10012841.g ID=Lus10012841.BGIv1.0 annot-version=v1.0 ATGTTGGAGGGAAGATCCTGTGATTCCTGCCTGGTGACTAGAGTATTTGGAGGCTCCTCCTGCCAATCCGAATCGCAGTGGAATTTCATGAACTACCGGT CTGGAAGTAGCAGCAAGCATTCCTTGGAGGATTCGGAGGACGATTTCCGGCTATCCAAATCTCGCAGGATATCGGGCAATGTCATCATCAGCAGCCTGCT CGATGAGCAGGCTGATGAGGCTGCTGGTGATGATGGTAATGATCAAGCTGGCCAGTCCTCCGACTCGGATCCCCTAATCGATCCGATCGGACGCGACAGT TCGATAGACTGCCTCATAAAAAACTCTCGATCCGATTACGGATCCTTAGCCTCGCTGAATCGGAGCTTCCGGAACTTGTTTCGGAGCGGGGAGATATATA AACTCAGGAGGCTACGCGGTGTGATCGAGCACTGGGTTTACTTCTCGTGCCACTTGCTCGAATGGGAGGCCTTCGATCCCATTCGTCGCAGGTGGATGCA TTTGCCTCGGATGCCTTCAAACGAATGCTTCATGTGTTCCGATAAGGAGTCCTTGGCTGTAGGTACCGAGCTCCTTGTATTCGGTAAGGAGGTTATGTCC CATGTTATATACAGATACAGCATGCTAACAAATTCTTGGTCCACCGGGATGATTATGAACTCTCCGAGGTGCCTTTTCGGGTCCGCAAGCCTAGGAGAGA TCGCGATTTTGGCTGGTGGTTGCGATACTATGGGGAACAGCTTGACTACTGTTGAGATGTATAATTCCGAGACTCACGCTTGGCTTACTTTACCGAGCAT GAACAAACCGAGGAAGATGTGTTCTGCGGTGTTCATGGATGGAAAATTCTACGTTATCGGTGGAATCGGTGCCAATGGCTACGATGTGCTCACCTGCGGT GAAGTTTACGATTTGGAAGCGAGGACTTGGACCGAGATTCCCAACATGAATCCCGGGAGGACTCCCGTTGTTCCGGAAGGAGTGCCCAGAGCTGCAGGGG CCCCACCGTTGCTTGCTGTGGTGAATAACCAGTTATATAACGCTGATCATAACGATATGGAGGTTAAGAAGTATGACAAGGAAAGGAGAGAGTGGATCGC GGTGGGGAGGCTCCCGGAACGTGCTCGCTCGATGAATGGTTGGGGGCTTGCGTTCAGGGCTTGTGGAGATCAGCTCATAGTCATTGGTGGACCTAGGACG CCGGGTGCAGGGTTTATAGAGCTGAACTCGTGGGTTCCTAGCGAAGGTGGACCTCCGCATTGGGACCTTCTCGCGAGGAAGCAATCGGTTAATTTCGTCT ATAATTGTGCCGTCATGGGTTGCTGA
AA sequence Show only first row Show all	>Lus10012841 pacid=23162968 polypeptide=Lus10012841 locus=Lus10012841.g ID=Lus10012841.BGIv1.0 annot-version=v1.0 MLEGRSCDSCLVTRVFGGSSCQSESQWNFMNYRSGSSSKHSLEDSEDDFRLSKSRRISGNVIISSLLDEQADEAAGDDGNDQAGQSSDSDPLIDPIGRDS SIDCLIKNSRSDYGSLASLNRSFRNLFRSGEIYKLRRLRGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMPSNECFMCSDKESLAVGTELLVFGKEVMS HVIYRYSMLTNSWSTGMIMNSPRCLFGSASLGEIAILAGGCDTMGNSLTTVEMYNSETHAWLTLPSMNKPRKMCSAVFMDGKFYVIGGIGANGYDVLTCG EVYDLEARTWTEIPNMNPGRTPVVPEGVPRAAGAPPLLAVVNNQLYNADHNDMEVKKYDKERREWIAVGRLPERARSMNGWGLAFRACGDQLIVIGGPRT PGAGFIELNSWVPSEGGPPHWDLLARKQSVNFVYNCAVMGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	0	1
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	3.9	0.8829
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10041953 [exp]	5.2	0.8737
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10023607 [exp]	6.9	0.8870
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	9.5	0.8931
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	11.4	0.8946
AT2G45360			Protein of unknown function (D...		Lus10024565 [exp]	12.0	0.8743
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10010354 [exp]	12.1	0.8610
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	14.1	0.9021
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	17.4	0.8617
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	17.7	0.8709

Compare expression of checked genes

Lus10012841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.