Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39860 96 / 2e-27 bHLH BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT3G28857 96 / 4e-27 bHLH PRE5 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G26945 94 / 1e-26 bHLH KDR, PRE6 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G15160 90 / 5e-25 bHLH BNQ2, BHLH134, PRE2 BASIC HELIX-LOOP-HELIX PROTEIN 134, BANQUO 2 (.1) AT1G74500 83 / 5e-22 bHLH TMO7, PRE3, ATBS1, bHLH135 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) AT3G47710 79 / 9e-21 bHLH BNQ3, PRE4, bHLH161 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030490 [exp] 142 / 2e-45 AT3G28857 102 / 4e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10037198 [exp] 117 / 2e-35 AT1G26945 114 / 1e-34 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036732 [exp] 116 / 2e-35 AT1G26945 115 / 6e-35 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024241 [exp] 79 / 1e-20 AT3G47710 123 / 2e-38 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) Lus10023610 [exp] 76 / 3e-19 AT3G28857 109 / 9e-33 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10008626 [exp] 66 / 2e-15 AT3G28857 71 / 1e-17 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081300 [exp] 101 / 2e-29 AT5G39860 126 / 1e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.004G128400 [exp] 95 / 5e-27 AT5G39860 124 / 8e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.015G063300 [exp] 89 / 2e-24 AT1G74500 75 / 3e-19 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.012G069500 [exp] 85 / 5e-23 AT1G74500 81 / 2e-21 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012842 pacid=23163007 polypeptide=Lus10012842 locus=Lus10012842.g ID=Lus10012842.BGIv1.0 annot-version=v1.0 ATGTCAAGTATTAGAAGATCATCTTCGTCCCGGTCGAGACACACCACGACAAGGAGATCTAGTGCCATCTCTGATGATCAGATCATTGACCTCATTTCAA AACTTCAACGACTCGTCCCAGAGGCAAACTCCACCTCTCACTGCTCTCGTAATAAGGGTTCGGCATCCAAGGTGTTGCAGGAGACATGCAACTACATAAG GGAGTTGAACAGGCAGGTGGACGATCTGAGCGGAAGGCTGTCGGAGCTATTGGCCTCGATAGATTCCGACAGCGACCAAGCCGCCATTATTAGGAGCTTG CTCATGTAG
AA sequence Show only first row Show all	>Lus10012842 pacid=23163007 polypeptide=Lus10012842 locus=Lus10012842.g ID=Lus10012842.BGIv1.0 annot-version=v1.0 MSSIRRSSSSRSRHTTTRRSSAISDDQIIDLISKLQRLVPEANSTSHCSRNKGSASKVLQETCNYIRELNRQVDDLSGRLSELLASIDSDSDQAAIIRSL LM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10012842 [exp]	0	1
					Lus10008326 [exp]	10.5	0.9917
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	15.9	0.9904
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	20.1	0.9893
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10030490 [exp]	21.8	0.9677
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	23.4	0.9887
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	26.2	0.9887
					Lus10016593 [exp]	28.7	0.9887
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	28.8	0.9775
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032222 [exp]	29.0	0.8869
AT5G13620			unknown protein		Lus10017168 [exp]	31.0	0.9887

Compare expression of checked genes

Lus10012842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.