Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14340 282 / 3e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 164 / 5e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 147 / 4e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G17720 145 / 5e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 144 / 6e-42 BPA1 binding partner of acd11 1 (.1.2.3) AT5G32450 138 / 1e-39 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G67950 118 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G09880 41 / 0.0005 Splicing factor, CC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030491 [exp] 446 / 7e-161 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10007254 [exp] 218 / 5e-66 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 147 / 1e-42 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 146 / 2e-42 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040095 [exp] 145 / 6e-42 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 140 / 5e-40 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 134 / 6e-38 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 126 / 2e-34 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013651 [exp] 128 / 3e-34 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081500 [exp] 275 / 9e-94 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 261 / 5e-88 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 145 / 2e-42 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G138400 [exp] 142 / 5e-41 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 138 / 2e-39 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 136 / 6e-39 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 127 / 3e-35 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.001G070200 [exp] 47 / 2e-06 AT5G32450 65 / 8e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 45 / 4e-05 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 42 / 0.0002 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10012843 pacid=23162979 polypeptide=Lus10012843 locus=Lus10012843.g ID=Lus10012843.BGIv1.0 annot-version=v1.0 ATGAGTGAAGAAGGTGGGTATGTGGTTGAAGTTACGGGGCTATCACCCAAGGCAACGGAGAAAGATGTTCGTGACTTCTTCGCCTTCTCTGGCACAATTG ATAACATTGAAATCGTCAGGTCTGGTGATTATGCTGCTTGCACTGCTTATGTAACGTTTAGAGATGCCTACTCTCAGGAAACTGCTGTCCTGCTCAGTGG TGCCACCATTTTGGATGAACGAGTGTGCATAACACGCTGGGGACGCTACGAGGACGAATTCGATTTCTGGAACAAGCCTTCGACAACATCGACAGACCAC GAAAGCAATCAACCCCAAGACCCAACGGGCCAATTCCCGAGCAGTGCAGGAGAAGCAGTAAACAAAGCACAAGAAGTGGTCACAACAATGCTGTCCGTGG GATACGTGCTAGGCAAAGATGCACTAACCAAGGCGAAAGAGTTCGACGAGTCTCATCAAGTCTCGGCCACCGCCACTGCTAAGGTATCCGAGTTCACCGA GAGGATCGGCCTAGCTGACAAGCTCTTCGCAGGGATGGAAGCTGTGAAATCCGTGGACGATAAGTACCATGTCTCCGAAACGACCAAGACAGCTGTGGCT GCTACGGCTAGATCAGCAGCGTCGGCAGCTAACACAGTGATCAACAGTAGCTACTTTTCTAAGGGCGCTCTTTGGGTCTCAGGCGCTCTGAACCGAGCTG CGAATATTGCTTCTGATTTGGGCAGCAAGGGTGCTCAGCATTGA
AA sequence Show only first row Show all	>Lus10012843 pacid=23162979 polypeptide=Lus10012843 locus=Lus10012843.g ID=Lus10012843.BGIv1.0 annot-version=v1.0 MSEEGGYVVEVTGLSPKATEKDVRDFFAFSGTIDNIEIVRSGDYAACTAYVTFRDAYSQETAVLLSGATILDERVCITRWGRYEDEFDFWNKPSTTSTDH ESNQPQDPTGQFPSSAGEAVNKAQEVVTTMLSVGYVLGKDALTKAKEFDESHQVSATATAKVSEFTERIGLADKLFAGMEAVKSVDDKYHVSETTKTAVA ATARSAASAANTVINSSYFSKGALWVSGALNRAANIASDLGSKGAQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10012843 [exp]	0	1
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	2.8	0.8751
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	4.7	0.8708
					Lus10032951 [exp]	7.7	0.8331
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	12.5	0.8128
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	16.0	0.8258
AT3G48030			hypoxia-responsive family prot...		Lus10002358 [exp]	16.5	0.8100
AT5G60570			Galactose oxidase/kelch repeat...		Lus10041299 [exp]	18.3	0.8108
AT1G70140		ATFH8	formin 8 (.1)		Lus10029212 [exp]	21.1	0.7385
AT5G23850			Arabidopsis thaliana protein o...		Lus10027472 [exp]	21.2	0.8236
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10029541 [exp]	21.6	0.7847

Compare expression of checked genes

Lus10012843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.