Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02860 438 / 2e-148 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) AT1G71890 372 / 3e-122 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT5G06170 368 / 1e-120 ATSUC9 sucrose-proton symporter 9 (.1) AT1G71880 365 / 2e-119 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G22710 364 / 7e-119 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G66570 362 / 3e-118 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 357 / 2e-116 ATSUC8 sucrose-proton symporter 8 (.1) AT1G09960 355 / 1e-115 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT5G43610 351 / 4e-114 ATSUC6 sucrose-proton symporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030492 [exp] 604 / 0 AT2G02860 863 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Lus10032815 [exp] 403 / 6e-134 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10028614 [exp] 336 / 6e-108 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 329 / 2e-105 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007691 [exp] 231 / 2e-70 AT1G09960 425 / 1e-147 sucrose transporter 4 (.1) Lus10028616 [exp] 214 / 1e-61 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 212 / 7e-61 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10009428 [exp] 201 / 3e-58 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10029766 [exp] 204 / 6e-58 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148100 [exp] 499 / 2e-170 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.010G093600 [exp] 485 / 7e-165 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.002G106900 [exp] 377 / 6e-124 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.013G115200 [exp] 374 / 1e-122 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 214 / 1e-61 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012844 pacid=23163039 polypeptide=Lus10012844 locus=Lus10012844.g ID=Lus10012844.BGIv1.0 annot-version=v1.0 ATGGATGCTGTGTCGATTCGGGTGCCGTACAAGAACCTGAGGAAGGATGTGGAGGTGGAAATGGCGAGCTTGGGGGATGAAGGGTCGTCGCCGAATCAGA TGTTCGAGCTGGATTCTCCTGCTTATGGTCACTTGTCGGTGAATTCCGACGGTACCAACTCCAATTTCGCTTCGCCGACGGGTGAAGTCGGATCGCAGGC GCCGAAGCATTGTAGCTTGGTTACTCTTGTGCTTAGTTGTACGGTGGCCGCCGGAGTGCAGTTCGGCTGGGCTCTGCAGCTGTCTCTTTTGACTCCGTAT ATCCAGACACTTGGAATAGAACACGCTTTCTCATCGTTTATTTGGCTCTGTGGCCCTATTACTGGCCTTGTGGTGCAACCTTGTGTGGGTATTTGGAGTG ATAAGTGCTCTTCAAAATATGGAAGAAGACGACCCTTTATTCTTGCAGGATCACTTATGATCTCGATCGCTGTGATAATTATCGGATTTTCTGCAGACAT TGGTTATTTGTTAGGGGATACCAAGGAGCATTGCAGTACATTCAAAGGCACTCGGACTAGGGCGGCAATTATCTTTGTTATTGGTTTCTGGATGCTGGAT CTTGCTAATAATACGGTTCAGGGACCAGCTCGAGCTCTTCTAGCTGATTTTGCAGGTGCATTTTCCTACTTAAGCTTTCTGTGCCATCTCCTTTTGTCTT TGTACCTCTCATCTCGCAGTTCACTGACGGGGAAGGACGGGGACTCGGGGAGGGTAGAAAGTGGAGACAGTTCTTTCGTTTTCTTTGATCGAGCGCGATT TGATGTCTGGTATCAATTATTTCAGGCCCTGATCAACGCAATACCGCCAATGCTATATTTTGCTTATGGATGGCTGTTGGAAACATACTTGGATTTTCTG CTGGTGCTAGTGGCAGCTGGAACAGATGTCTTATCAATTCTTTGCGAATTACATCTGAGCAGGTGGTTTCCTTTTCTAATGAGTAGAGCTTGTTGTGAAG CTTGTGGAAATCTTAAAGCAGCATTTCTTGTAGCCGTGGTAAGTGTGCGTAGTGGCAAACAAAATGGCATCGAACTATCAAAATTTGATTCTCATGATCA ACATATAGGGAATCCTAGTGCCAACGGTACTGGAAATGGGTATGAAAAGCTTCACGTTCATAATCATGCCAACCCTGTGGATGATTCCAGTGACAGTCTT GATGATGGCCCTGGAGCAGTTATGGTTAAATTGCTGACCAGTTTAAGGCATTTGCCTCCTGGGATGCATGCCGTACTTGTTGTTATGGCTCTTACTTGGT TATCCTGGTTCCCCTTCTTTCTTTTTGACACTGACTGGATGGGCAGAGAAGTCTATCATGGAGATCCCAAGGGGGATGCTAATGTGACTAACTTGTACGA TCAAGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAACTCAGTTGTTCTCGGCATCAGTTCTTTCCTTATCGAACCAATGTGTCAGAAGTTCGGAGCA AGACTCGTATGGGCGATGAGCAATTTCATCGTCTTCGCCTGCATGGTCACTACTGCCATCATAAGTTTGGTATCTATGTCTCAATATTCTAAAGGAATTG AACACGTTATTGGTGCGAATTCCCCGATCAAGATAGCTTCCTTAGTTGTTTTCGCTCTTCTCGGTTTTCCTCTCGCAATAACCTATAGCGTTCCATTCTC AGTCACAGCTCAGTTAACTGCTGATTCTGGTGGTGGTCAAGGATTAGCCATCGGAGTCCTCAACCTCGCAATCGTCGTTCCTCAGATGATAGTATCCCTT GGGGCGGGACCATGGGATGCATTATTCGGTGGAGGCAACATACCAGCATTCGTCCTAGCTTCAATAAGCGCTCTTGCAGCCGGTGTAATCGCAACTCTCA AGCTTCCGAATCTCTCAAGCTCCTTCCAGTCAACAGGCATGCATTTCGGCTAG
AA sequence Show only first row Show all	>Lus10012844 pacid=23163039 polypeptide=Lus10012844 locus=Lus10012844.g ID=Lus10012844.BGIv1.0 annot-version=v1.0 MDAVSIRVPYKNLRKDVEVEMASLGDEGSSPNQMFELDSPAYGHLSVNSDGTNSNFASPTGEVGSQAPKHCSLVTLVLSCTVAAGVQFGWALQLSLLTPY IQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMISIAVIIIGFSADIGYLLGDTKEHCSTFKGTRTRAAIIFVIGFWMLD LANNTVQGPARALLADFAGAFSYLSFLCHLLLSLYLSSRSSLTGKDGDSGRVESGDSSFVFFDRARFDVWYQLFQALINAIPPMLYFAYGWLLETYLDFL LVLVAAGTDVLSILCELHLSRWFPFLMSRACCEACGNLKAAFLVAVVSVRSGKQNGIELSKFDSHDQHIGNPSANGTGNGYEKLHVHNHANPVDDSSDSL DDGPGAVMVKLLTSLRHLPPGMHAVLVVMALTWLSWFPFFLFDTDWMGREVYHGDPKGDANVTNLYDQGVREGAFGLLLNSVVLGISSFLIEPMCQKFGA RLVWAMSNFIVFACMVTTAIISLVSMSQYSKGIEHVIGANSPIKIASLVVFALLGFPLAITYSVPFSVTAQLTADSGGGQGLAIGVLNLAIVVPQMIVSL GAGPWDALFGGGNIPAFVLASISALAAGVIATLKLPNLSSSFQSTGMHFG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	0	1
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	2.2	0.8288
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	4.7	0.8229
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	7.5	0.8022
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	9.4	0.7881
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10030012 [exp]	11.0	0.7820
AT4G00440			Protein of unknown function (D...		Lus10014776 [exp]	20.7	0.7797
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	22.3	0.7883
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	25.4	0.7672
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	28.0	0.7153
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	28.3	0.7550

Compare expression of checked genes

Lus10012844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.