Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14360 569 / 0 ATUTR3, UTR3 UDP-galactose transporter 3 (.1) AT2G02810 551 / 0 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT3G46180 100 / 3e-23 UTR5, ATUTR5 UDP-galactose transporter 5 (.1) AT5G59740 97 / 8e-22 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT1G12600 61 / 7e-10 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 53 / 2e-07 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030495 [exp] 659 / 0 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 101 / 2e-23 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10040866 [exp] 68 / 2e-12 AT5G59740 479 / 8e-172 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10029605 [exp] 57 / 1e-08 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10006337 [exp] 57 / 2e-08 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 55 / 6e-08 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 53 / 2e-07 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139100 [exp] 546 / 0 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 533 / 0 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.001G234800 [exp] 99 / 1e-22 AT5G59740 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.003G121000 [exp] 56 / 3e-08 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.014G077500 [exp] 55 / 6e-08 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.001G111000 [exp] 55 / 7e-08 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10012848 pacid=23162988 polypeptide=Lus10012848 locus=Lus10012848.g ID=Lus10012848.BGIv1.0 annot-version=v1.0 ATGACACCATCCAATGGGGCTCAAGTGACGTTGACAAATTCCCAGCCCATAACAGATACTACCGTCACCGTGACAAACAGAAATACGAATCCTCATTCGA ACGGACCAATTACAGCTCAGCAGCCACGAAAGCTATCCAATCAGGACTCTCCACGTAGGAACATCGACGTTGCTTCACGTTTCGCCGTTGACGGTTCGGT AATAGCTCCGATCTGCGTTTTATTCATATTCGTTGCCACTTGTTTTGGATATTGTCCGGAGCTGGTACTCGCCGGTGGAAATCGTAGAAAAGAAGGATCA CCGGATCTTCGGCCGGCGACGGGAATGGAGGCACACGGCGCCGGGTCTCGGCGAGTGTTTCTGTTGGCGTTTTGCATCGCCGGGATCTGGTCCGCGTACA TTTACCAAGGGGTCCTTCAGGAAACTCTATCCACCAAGCGATTTGGTCCTGATGGGGAGCGTTTTGAGCACTTGGCGTTTCTTAATCTGGCGCAGAGTGT CGTCTGCTTGATTTGGTCTTACATGATGATTAAGATATGGTCTAGGAGTAGCGAAGGTGGTGCCCCCTGGTGGTCGTATTGGAGTGCCGGCATTACTAAT ACGATTGGTCCGGCTATGGGGATTGAAGCTTTGAAGTACATTAGCTATCCAGCTCAGGCATGTTCCATTACTCACTTGTCTGAAAGGGAAGCTGAAGTGA GTTGTGTTAATAGTTTTGCAGATATTGCTATGGGGTTCAGTTTCTTCGTCACTGTTCTCGCGAAATCTTCGAAGATGATTCCAGGCGCCTTGGTTGATTC TTTTTCTGCAGTTATGTTGATGGGGAGTCTCGTATATGGCATAAGATATACCATTCCAGAGTACTTGTGTACTTTCCTCGTTGCAGGAGGCGTATCTACG TTTGCGCTATTGAAGACTAGCTCGAAAACCATTAGCAAGTTGGCTAATCCTAATGCTCCTCTTGGATACGGGCTTTGCTTCTTGAACCTTGCATTCGATG GATTTACAAACGCCACCCAAGATTCGCTTACTGCAAGGTATCCGAAGACTACTGCATGGGACATCATGTTGGGAATGAACTTATGGGGCACCATATACAA CGTGCTCTACATGTTCGGTTGGCCACACGGAATGGGATACGACGCGGTCCAGTTCTGCAAGCAGCATCCAGAGGCGGCATGGGACATCCTCTACTACTGC CTGTGTGGTGCAGTGGGCCAGAACTTCATCTTCCTAACGATAAGCCGGTTCGGGTCACTTGCCAACACCACCATCACCACCACCCGCAAGTTCATGAGCA TCGTGATTTCTTCTGTACTCAGTGGCAACCCTCTATCTCCGAAGCAATGGGGGTCGGTAGCCATGGTCTTCTCCGGCCTGTCGTACCAGATCTTTCTCAA GTGGAGAAAGTTGCAGAAGGTGGCCCAGAAGAAGAGGAAGAACACTTGA
AA sequence Show only first row Show all	>Lus10012848 pacid=23162988 polypeptide=Lus10012848 locus=Lus10012848.g ID=Lus10012848.BGIv1.0 annot-version=v1.0 MTPSNGAQVTLTNSQPITDTTVTVTNRNTNPHSNGPITAQQPRKLSNQDSPRRNIDVASRFAVDGSVIAPICVLFIFVATCFGYCPELVLAGGNRRKEGS PDLRPATGMEAHGAGSRRVFLLAFCIAGIWSAYIYQGVLQETLSTKRFGPDGERFEHLAFLNLAQSVVCLIWSYMMIKIWSRSSEGGAPWWSYWSAGITN TIGPAMGIEALKYISYPAQACSITHLSEREAEVSCVNSFADIAMGFSFFVTVLAKSSKMIPGALVDSFSAVMLMGSLVYGIRYTIPEYLCTFLVAGGVST FALLKTSSKTISKLANPNAPLGYGLCFLNLAFDGFTNATQDSLTARYPKTTAWDIMLGMNLWGTIYNVLYMFGWPHGMGYDAVQFCKQHPEAAWDILYYC LCGAVGQNFIFLTISRFGSLANTTITTTRKFMSIVISSVLSGNPLSPKQWGSVAMVFSGLSYQIFLKWRKLQKVAQKKRKNT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10012848 [exp]	0	1
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	1.0	0.9422
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	2.0	0.8847
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	3.0	0.8740
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	7.7	0.8700
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10009608 [exp]	8.1	0.8404
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	12.7	0.8625
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	13.0	0.8535
AT3G06150			unknown protein		Lus10004424 [exp]	13.2	0.8647
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	14.0	0.8501
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	14.4	0.8363

Compare expression of checked genes

Lus10012848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.