Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17020 711 / 0 transcription factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005856 [exp] 337 / 7e-111 AT3G09010 279 / 6e-89 Protein kinase superfamily protein (.1) Lus10001212 [exp] 303 / 3e-96 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10002564 [exp] 227 / 1e-73 AT4G17020 174 / 5e-54 transcription factor-related (.1.2.3) Lus10041753 [exp] 166 / 3e-50 AT4G17020 129 / 1e-36 transcription factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041600 [exp] 717 / 0 AT4G17020 758 / 0.0 transcription factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03849 [flax] [poplar] Tfb2 Transcription factor Tfb2
Representative CDS sequence Show only first row Show all	>Lus10012849 pacid=23162986 polypeptide=Lus10012849 locus=Lus10012849.g ID=Lus10012849.BGIv1.0 annot-version=v1.0 ATGCCTCAAGTAAAGATAATTGCGAAGAACTTCATGGACATGGTGGCAGCTTTGCCCGCCATGAAACTCGATGTTCTCTACGAGAACTCATTCATCTGCG AAGCCATTCTCAGGTCACTCCCGCCTCTGGCGAAGAAGTACGTTATACAAATGCTATACATAGAAGGCTCTGTGACTGCTAAGTTATTGGAGGAGTGGGT ACTTGCCGACGGTTTGACCAAGCACTTGGTCTCCATTGATCGGTTGGTTCAGCTCAGAATCTTCACCGAAGCCGTTGAAAGGAAGAAAGAGAAATCCTAC AGAATAAACCCAACTTTTCAGGCTAATCTCCAGAAGCATATAATGACCGGAGGAGTTTTCCCGAGGCAACCGATGCCTCCTGGTGTTGGAAAGCTTCCAA CGTTGAGTGAACTCGAGACTTATGCTCTTGACCAATGGGAGTGTTTCCCGCTGAGCCTAATAAACTCAGGCCAATCCGACAAAGTAACTAGCTTTAGTTC TTCTATGATGCGAGTTTTCCAGCGTGGTCTTCTTAGTGAGAAACAACCTGCAAGGTTGACAGAAAGGGGTTTCCAGTTTCTGCTAATGGAGACAAATGCG CAACTATGGTATATCATCAGAGAATACATAACTAATGCAGAGGAACGAGATGTGGATCCAGTGGACCTAATTTCTTTCCTGTTAGAACTCAGTTTTCATA TCACTGGCAAGGCATATAATTTGAATACGTTGACTGATGTTCAGAGGAGTGCAATCAAGGACTTTGCGGACTTGGGATTGGTTAAACTTCAAAAGGGCAG GAATGAAAGTTGGTTTATACCTACTAAATTGGCTACCAATTTATCGGTTAGCTTAGCTGATTCATCAACACGAAAACAGGGATTTCTTGTAGTGGAAACA AATTTTAAGATGTATGCATACTCAACATCTAGGCTGCACTGTGAAATTCTACGTCTTTTCTCACGGGTTGAGTATCAACTTCCTAACCTTATCGTGGCAG CAATCACGAAGGAAAGCCTGTACAATGCTTTTGTAAACGGAATCACAGCAGACCAGATAGTTTCCTTCATGCAGCAGAATGCGCATCCTCGTCTAGCGCA GAAACTACCAACAGTTCCGGAGAATGTCACCGATCAGATACGGCTGTGGGAAACCGATCTCAATCGGGTCGAACCGACCATGGCTTACTTCTACGACGAT TTCCTATCTATGGATGTGTTTGAATCTGCTTGCGACTTGGCACGACAGTGGAGCAGTTTACTGTGGGAAGATTCGGACAAAATGCGGCTGGTAGTGAAAG CTGAAATCCATCAGGACATGAAAGACTTTCTTAGTGGTCAGAAACGGTAA
AA sequence Show only first row Show all	>Lus10012849 pacid=23162986 polypeptide=Lus10012849 locus=Lus10012849.g ID=Lus10012849.BGIv1.0 annot-version=v1.0 MPQVKIIAKNFMDMVAALPAMKLDVLYENSFICEAILRSLPPLAKKYVIQMLYIEGSVTAKLLEEWVLADGLTKHLVSIDRLVQLRIFTEAVERKKEKSY RINPTFQANLQKHIMTGGVFPRQPMPPGVGKLPTLSELETYALDQWECFPLSLINSGQSDKVTSFSSSMMRVFQRGLLSEKQPARLTERGFQFLLMETNA QLWYIIREYITNAEERDVDPVDLISFLLELSFHITGKAYNLNTLTDVQRSAIKDFADLGLVKLQKGRNESWFIPTKLATNLSVSLADSSTRKQGFLVVET NFKMYAYSTSRLHCEILRLFSRVEYQLPNLIVAAITKESLYNAFVNGITADQIVSFMQQNAHPRLAQKLPTVPENVTDQIRLWETDLNRVEPTMAYFYDD FLSMDVFESACDLARQWSSLLWEDSDKMRLVVKAEIHQDMKDFLSGQKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	0	1
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	1.4	0.9398
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	2.0	0.9437
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	2.2	0.9323
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	3.5	0.9379
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	4.6	0.9282
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	5.3	0.9332
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	6.5	0.9201
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10015686 [exp]	7.1	0.9138
AT1G63855			Putative methyltransferase fam...		Lus10028415 [exp]	7.3	0.9135
AT5G54850			unknown protein		Lus10011150 [exp]	7.3	0.9293

Compare expression of checked genes

Lus10012849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.