Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02800 610 / 0 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 575 / 0 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G26970 517 / 0 Protein kinase superfamily protein (.1) AT1G69790 514 / 0 Protein kinase superfamily protein (.1) AT2G28930 481 / 1e-169 APK1B protein kinase 1B (.1.2.3) AT1G07570 479 / 1e-168 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 461 / 9e-162 NAK Protein kinase superfamily protein (.1.2) AT2G39660 434 / 5e-151 BIK1 botrytis-induced kinase1 (.1) AT1G74490 431 / 1e-149 Protein kinase superfamily protein (.1) AT3G55450 425 / 1e-147 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030496 [exp] 634 / 0 AT2G02800 551 / 0.0 protein kinase 2B (.1.2) Lus10042192 [exp] 497 / 2e-175 AT2G02800 479 / 3e-168 protein kinase 2B (.1.2) Lus10008627 [exp] 492 / 9e-171 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10024391 [exp] 473 / 3e-166 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 470 / 1e-165 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 470 / 3e-165 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040806 [exp] 467 / 1e-163 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10016537 [exp] 465 / 4e-163 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10002697 [exp] 460 / 2e-161 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093700 [exp] 653 / 0 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 637 / 0 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.009G031300 [exp] 483 / 3e-170 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 483 / 4e-170 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G056400 [exp] 473 / 2e-166 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 469 / 9e-165 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 463 / 3e-162 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.009G020700 [exp] 436 / 4e-152 AT1G14370 446 / 7e-156 PBS1-like 2, kinase 1, protein kinase 2A (.1) Potri.017G077300 [exp] 431 / 1e-148 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 424 / 1e-145 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10012850 pacid=23163008 polypeptide=Lus10012850 locus=Lus10012850.g ID=Lus10012850.BGIv1.0 annot-version=v1.0 ATGGGGAACTGCTTAGATTCTTCTGCTAAAGTTGATGCTACTCTCAGCTCTCATAATATCCCTTCTGGACCAGGAGGCTCAAGAATTTCGAGTAAAACTA GCAGCCAGTCATCCGGTCCATCAACTCTGACCATTCCGTCATCATACAGTGAGAGGAGCTCCGACTTCCTGCCTACACCTCGAACCGAAGGCGAAATACT CTCATCACCGAACTTAAAGGCGTTTACTTTCAGTGAGTTGAGAAATGCCACCAGGAATTTCCGCCCGGACAGCCTTCTCGGTGAAGGCGGATTCGGATAC GTGTTCAAAGGCTGGATCGACGAGATCACGTTGACTGCTGCTAAGCCTGGATCCGGTATTGTTATCGCTGTCAAGAAGCTTAAACCCGAAGGCTTCCAAG GCCACAAGGAATGGCTGACAGAAGTTAACTATCTTGGCCAACTTCACCATCCTAATTTGGTTAAACTGATTGGATATTGCCTTGAGGGCGAGAATCGGCT TTTGGTTTACGAGTTCATGCCCAAAGGGAGTCTCGAGAATCATCTGTTTAGAAGAGGGCCAGACCCACTCCCATGGGCAGTGAGAATGAAAGTTGCTATA GGTGCAGCTAGAGGGCTCTCTTTCCTTCATGATGCAGAGTCACAAGTCATCTACCGTGATTTCAAGGCTTCGAATATTCTTCTAGATGCGGATTTCAATG CCAAGCTGTCCGACTTCGGCTTGGCCAAGGCCGGCCCCACGGGGGACAGAACACACGTGTCGACTCAGGTCATGGGAACGCAAGGCTACGCAGCTCCTGA ATACGTAGCAACAGGTCGTCTCACATGCAAGAGCGACGTGTACAGCTTTGGAGTGGTGCTGCTCGAGCTGCTATCGGGGAGGCGAGCTGTGGACAACACA AAAGTCGGGGGTGAGCAGATTCTCGTATACTGGGCGAAGCCTTACCTGAGCGACAAACGGAAGCTGTTCCGGATCATGGACACGAAGTTGGGAGGTCAGT ACCCGCAGAAATCAGCCATAACAGCAGCTCACTTGGCGTTCCAGTGCTTGAACAACGAGGCGAAACTCAGGCCTCGGATGTCAGAGGTGCTTGCTGCTCT GGAAACGATCGAGTCCCCGAAGGCTAGACAGATGGTGATGGAGCACCACCACCAGGGGGCACTTAACTCTCCGGTTCTGCGCTCTCCACGAAATCATCAA GTACGTCACTCTCCTGTTCACCTAACTGCGAATGCTTCGCCGTTGAAAGGGCACCGACTCTCTCCACGAGTTCGCTGA
AA sequence Show only first row Show all	>Lus10012850 pacid=23163008 polypeptide=Lus10012850 locus=Lus10012850.g ID=Lus10012850.BGIv1.0 annot-version=v1.0 MGNCLDSSAKVDATLSSHNIPSGPGGSRISSKTSSQSSGPSTLTIPSSYSERSSDFLPTPRTEGEILSSPNLKAFTFSELRNATRNFRPDSLLGEGGFGY VFKGWIDEITLTAAKPGSGIVIAVKKLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPDPLPWAVRMKVAI GAARGLSFLHDAESQVIYRDFKASNILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTCKSDVYSFGVVLLELLSGRRAVDNT KVGGEQILVYWAKPYLSDKRKLFRIMDTKLGGQYPQKSAITAAHLAFQCLNNEAKLRPRMSEVLAALETIESPKARQMVMEHHHQGALNSPVLRSPRNHQ VRHSPVHLTANASPLKGHRLSPRVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	0	1
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	4.6	0.9359
AT5G26990			Drought-responsive family prot...		Lus10031467 [exp]	5.0	0.9276
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	7.2	0.9294
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	7.9	0.9326
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	8.4	0.9355
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	8.8	0.9043
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10018850 [exp]	9.9	0.9131
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	10.1	0.9253
AT5G03230			Protein of unknown function, D...		Lus10015087 [exp]	11.0	0.8999
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	12.6	0.9209

Compare expression of checked genes

Lus10012850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.