Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47810 347 / 6e-124 ATVPS29, MAG1 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030497 [exp] 380 / 5e-137 AT3G47810 346 / 2e-123 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354000 [exp] 358 / 4e-128 AT3G47810 340 / 6e-121 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Potri.011G077900 [exp] 355 / 3e-127 AT3G47810 338 / 3e-120 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012851 pacid=23162998 polypeptide=Lus10012851 locus=Lus10012851.g ID=Lus10012851.BGIv1.0 annot-version=v1.0 ATGGTGTTGGTTTTAGCTATAGGAGACCTTCATATACCCCACAGGGCAGCTGATCTGCCTCCGAAGTTCAAGTCCATGCTTGTTCCTGGCAAGATCCAGC ATATCATTTGCACTGGCAATCTCTGTATCAAAGAAGTGCATGACTACTTGAAGAGTCTGTGTCCTGATTTGCACATCACAAGAGGAGAATACGACGAAGA CTCACGTTATCCAGAGACCAAGACACTCACCATCGGCCAATTCAAGCTCGGAATTTGCCATGGCCATCAGGTTATTCCATGGGGAGACCTGGACTCACTG GCCATGCTACAAAGACAACTCGACGTGGATATCCTAGTAACTGGCCACACGCACCAGTTCAAAGCCTACAAACACGAAGGTGGCGTTGTGATCAACCCGG GCTCCGCCACTGGCGCTTACAGTAGCTTCACCTACGATGTCAACCCGAGCTTTGTGCTCATGGACATCGATGGCCTACGTGTCGTGGTGTACGTATACGA GCTAATTGACGGCGAGGTTAAGGTCGACAAGATTGACTTCAAGAAGACCGCCAATCCTCGTTGA
AA sequence Show only first row Show all	>Lus10012851 pacid=23162998 polypeptide=Lus10012851 locus=Lus10012851.g ID=Lus10012851.BGIv1.0 annot-version=v1.0 MVLVLAIGDLHIPHRAADLPPKFKSMLVPGKIQHIICTGNLCIKEVHDYLKSLCPDLHITRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSL AMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTANPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10012851 [exp]	0	1
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Lus10030984 [exp]	1.4	0.8045
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	7.1	0.7698
AT5G07960			unknown protein		Lus10034695 [exp]	12.4	0.7637
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	20.0	0.7446
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10008623 [exp]	25.2	0.7590
AT5G27440			unknown protein		Lus10041604 [exp]	36.9	0.6938
AT2G38905			Low temperature and salt respo...		Lus10023489 [exp]	39.6	0.6043
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	41.8	0.7404
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Lus10041116 [exp]	57.3	0.7289
AT1G76860			Small nuclear ribonucleoprotei...		Lus10011293 [exp]	58.0	0.7152

Compare expression of checked genes

Lus10012851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.