Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 99 / 3e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 99 / 3e-23 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72840 95 / 1e-21 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G72920 90 / 7e-21 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G40100 91 / 2e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72940 88 / 8e-20 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72860 88 / 3e-19 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 86 / 1e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 85 / 3e-18 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G04220 84 / 3e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030498 [exp] 208 / 2e-67 AT5G36930 115 / 2e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10009500 [exp] 136 / 1e-39 AT1G72940 115 / 4e-30 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) Lus10029921 [exp] 124 / 4e-33 AT5G36930 105 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014671 [exp] 112 / 1e-29 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004482 [exp] 112 / 4e-29 AT1G56540 111 / 2e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006929 [exp] 111 / 4e-29 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10012063 [exp] 107 / 8e-28 AT5G36930 124 / 5e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012853 [exp] 102 / 7e-27 AT3G22060 44 / 6e-06 Receptor-like protein kinase-related family protein (.1) Lus10027920 [exp] 106 / 2e-26 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G004500 [exp] 96 / 1e-23 AT5G36930 152 / 3e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 100 / 2e-23 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G269950 [exp] 94 / 6e-23 AT5G36930 147 / 3e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001314 [exp] 93 / 2e-22 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 96 / 3e-22 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 96 / 3e-22 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 96 / 3e-22 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G097300 [exp] 96 / 6e-22 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G003285 [exp] 96 / 6e-22 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 95 / 6e-22 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10012852 pacid=23162974 polypeptide=Lus10012852 locus=Lus10012852.g ID=Lus10012852.BGIv1.0 annot-version=v1.0 ATGGATCACTACATATCTTCATCTTCTTCCATTATTTCTCTTCCGGCCAAGCTCATCGTGGGATCCGCCATCCTGGTTTTACTGGTCGGATGTATTAGCC GAGACATCCTCGTCGCCGGCCAATTATGCACCGGAGATCCACCACACCATCCGACCAAGTACAGATCTTGGGTAGGGAAGGCTCTAAAGAAACTAGTGAA GGGAGCCCCTACGAGTTCGACGAAAATGATGAAAGCATATTACCCAAATAAAAAGGCTGGATCGGTTACCGGAGCGGCCACTTGTTACACCGCCGATGAA GCCGCGTGCCGGACTTGTCTACAGAATAGCAAAATGCTGCTATTTCACTACTGCACGAACACCTCCGGTGGAAACTTCGATAACGGATGTAACATGGAGT TCTGGGAAGTTGTTACAATTAATATGGGCTACCACGACGTATTTGTAAGCTTCCGAGGTCGGGACGTGCGGTACAAGTTCGTCGACCATCTCTTCGCCGC ACTCCGGAGGAACAAAGTGACGGCGTTCAGGGATGATCGCAACTTACGCCGGGGAGAAAGCATCGAGGACGGTGTTCGAAGGGCCATCAAGAATTCAAGC TTCTACGTCGTCGTTTTGACCCCCAACTACACTTCGTCTCCGTGGTGCTTGGATGAGCTTATCAAAAAGATGAAATGCTCCACTAATATTGATGGTGTTA ACCGGAACAAAAATCCGTACACGAACGAAAGATTAGACACGTGGCTTCGGGCGCTTCATTGGATCGCCGGCATAGCTGGCTGGGTTGTCAGTGACGGGCA GTGTGTCACATGTTTTGCGTATAATTGA
AA sequence Show only first row Show all	>Lus10012852 pacid=23162974 polypeptide=Lus10012852 locus=Lus10012852.g ID=Lus10012852.BGIv1.0 annot-version=v1.0 MDHYISSSSSIISLPAKLIVGSAILVLLVGCISRDILVAGQLCTGDPPHHPTKYRSWVGKALKKLVKGAPTSSTKMMKAYYPNKKAGSVTGAATCYTADE AACRTCLQNSKMLLFHYCTNTSGGNFDNGCNMEFWEVVTINMGYHDVFVSFRGRDVRYKFVDHLFAALRRNKVTAFRDDRNLRRGESIEDGVRRAIKNSS FYVVVLTPNYTSSPWCLDELIKKMKCSTNIDGVNRNKNPYTNERLDTWLRALHWIAGIAGWVVSDGQCVTCFAYN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10012852 [exp]	0	1
AT3G15810			Protein of unknown function (D...		Lus10006656 [exp]	2.8	0.7343
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	3.0	0.8134
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Lus10011888 [exp]	4.2	0.6746
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	4.6	0.7299
					Lus10020479 [exp]	6.0	0.7092
AT1G01490			Heavy metal transport/detoxifi...		Lus10024672 [exp]	8.1	0.7215
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10042315 [exp]	13.6	0.7099
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	15.2	0.7280
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	17.0	0.7044
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	28.7	0.6918

Compare expression of checked genes

Lus10012852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.