Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50440 107 / 2e-29 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23610 96 / 5e-25 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23560 96 / 8e-25 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23580 94 / 3e-24 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23550 92 / 1e-23 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23620 90 / 8e-23 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23570 89 / 8e-23 ATMES19 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) AT2G23600 88 / 5e-22 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT4G37150 87 / 1e-21 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT5G10300 83 / 4e-20 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000841 [exp] 121 / 9e-36 AT2G23570 129 / 1e-37 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) Lus10023326 [exp] 123 / 2e-35 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10022467 [exp] 106 / 7e-29 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 100 / 1e-26 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10038592 [exp] 96 / 5e-25 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10020004 [exp] 82 / 6e-21 AT2G23570 115 / 1e-32 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) Lus10009203 [exp] 85 / 2e-20 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005400 [exp] 82 / 1e-19 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10005402 [exp] 81 / 4e-19 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G037700 [exp] 106 / 6e-29 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G036700 [exp] 101 / 3e-27 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G037300 [exp] 96 / 5e-25 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.009G107200 [exp] 94 / 6e-24 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107500 [exp] 93 / 7e-24 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036800 [exp] 90 / 2e-22 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.005G133600 [exp] 77 / 5e-18 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 77 / 6e-18 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 77 / 6e-18 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 76 / 1e-17 AT2G23590 254 / 4e-85 methyl esterase 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012855 pacid=23163046 polypeptide=Lus10012855 locus=Lus10012855.g ID=Lus10012855.BGIv1.0 annot-version=v1.0 ATGGCACTTTGTGAAGTAAAATTTGATAAAGAAGAAGAAAAACTTCCGATATCAGCATCTTTTGGACCGGATTACATCGAGACTCTAATGTACACAAAGT GTCAACCAGAGGATGTGGAACTGGGGAAACTAATGCTGAGACCATTCAAGTTTTTCCTGCAAGACTTGTCGATGGAATCTCTGCTGAGTGAAGCTAGATT CGGATCTGTGAAAAGGGTGTACATAGTGTGCAAAGAGGATATTGTGATGACGCAGGAATTTCAAGAAAGGGTGATACAGAGTTACCCACCAGACGAGGTT AAGTACATTGAAGGAGCTGACCATATGGCTATGCTCTCGAAACCGAACCAGCTTTGCCAGGCCCTGCTCGAAGTTGCCGACGAGGATTGGCTGAGTTTTT AG
AA sequence Show only first row Show all	>Lus10012855 pacid=23163046 polypeptide=Lus10012855 locus=Lus10012855.g ID=Lus10012855.BGIv1.0 annot-version=v1.0 MALCEVKFDKEEEKLPISASFGPDYIETLMYTKCQPEDVELGKLMLRPFKFFLQDLSMESLLSEARFGSVKRVYIVCKEDIVMTQEFQERVIQSYPPDEV KYIEGADHMAMLSKPNQLCQALLEVADEDWLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10012855 [exp]	0	1
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	4.7	1.0000
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	4.9	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	6.2	1.0000
					Lus10033089 [exp]	8.5	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10018417 [exp]	9.2	1.0000
					Lus10024550 [exp]	9.6	1.0000
					Lus10035617 [exp]	9.8	1.0000
AT5G52450			MATE efflux family protein (.1...		Lus10019470 [exp]	9.9	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	11.0	1.0000
AT5G35390			Leucine-rich repeat protein ki...		Lus10021595 [exp]	15.7	1.0000

Compare expression of checked genes

Lus10012855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.