Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76810 1097 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76820 1019 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 952 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G21160 929 / 0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 687 / 0 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2) AT2G40815 138 / 8e-35 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G17220 114 / 2e-25 FUG1 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) AT4G11160 93 / 1e-18 Translation initiation factor 2, small GTP-binding protein (.1) AT5G08650 56 / 2e-07 Small GTP-binding protein (.1) AT3G22980 53 / 3e-06 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030500 [exp] 1387 / 0 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030501 [exp] 387 / 6e-122 AT2G40815 168 / 4e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040355 [exp] 291 / 2e-90 AT1G76820 272 / 4e-85 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 226 / 2e-68 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10013713 [exp] 119 / 2e-26 AT1G17220 1267 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10005581 [exp] 114 / 4e-25 AT1G17220 1080 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10033933 [exp] 86 / 3e-16 AT4G11160 927 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Lus10040356 [exp] 56 / 7e-09 AT1G76810 56 / 2e-10 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10035968 [exp] 55 / 7e-07 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039200 [exp] 1103 / 0 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.019G103600 [exp] 976 / 0 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.019G065500 [exp] 197 / 8e-56 AT2G40815 213 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G132100 [exp] 146 / 2e-39 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G132300 [exp] 146 / 2e-39 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.011G140100 [exp] 118 / 2e-26 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G436300 [exp] 117 / 3e-26 AT1G17220 1076 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G095500 [exp] 96 / 9e-20 AT4G11160 828 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G305300 [exp] 58 / 7e-08 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 50 / 1e-05 AT5G39900 999 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF11987 [flax] [poplar] IF-2 Translation-initiation factor 2
Representative CDS sequence Show only first row Show all	>Lus10012856 pacid=23162989 polypeptide=Lus10012856 locus=Lus10012856.g ID=Lus10012856.BGIv1.0 annot-version=v1.0 ATGGGGAGAAAGAAGCCAGCTGCTCGCGGGGACGACGATAATGCTCCCGCCGTGTCCCAGGGCGGTGGAGGGAAATCTAAGAAGAAGGCGTTCATGATCG ATGATGATGAGTATTCCGTCGGCACGGAATTGTCTGAGGAGTCTCAGGTACAAGATGAGAAACCTATCATTACAGGAAAGAAGAAAGGTAAGAAGGGGGA CAAGAAAAATTCACGGGCTAAGCTGGAGAGTGACGAGGATGACGAGGTCCCCGAGATTTCTTTTGCTGGAAAGAAGAAACCCAAAGGTAAGAAAAGTGGA GGGACGAGTGGGTTCTCCACTTCGAGTTTTGGGCTACTTGGGGATGAAGATGATGGTGATGAGGATGAAGACAATGAGGTAACTGCGGTTGAAGATAGTG AGGATGAGGATGAACCGGTTGTGAGCTTTGCAGGCAAGAAGAAGAAGTCTCAGAAAGGCGGGAAGAGTGGTGGAAGCTTGTTTAGCGCTTCAGCTTTTGA AGCAATTGATGATGGTGAGGATGATGGAGAGGTTATTGATAAAGATGATGAAGATTTGGCCATTGAGTTCACTGGGAAAAAGAAATCCTCAAAGGGTGGT AAGAAGGCTGGTAATAGTGTAGTTAGTGCCGCAGCTAGTTTTGATGTTCTAGATGAGGATGAGAACGAGGAGGAAAAGGATGATGACGATGATGATGTTT CTGCAATAACTTTCTCTGGAAAGAAGAAGAAGTCATCCAAATCCACTAAAAAGAGTGATAATAAGTTTAGCATGGCATTACTGGATGACGAGGAAACTGT TGGAAGTACAGACGGAAAAGAGCTAGATGATGATGATGAAGATAGCTCTTCAATGGCTTTTACAGGTAAGAAGAAGTCTTCCAAAAAGAAGGGAACTACC AGTAAGAGCACTGGTGTATTTGCCACATTGGTTGAGGAAAAAGAGGATGTTGTTGATGATGCTATTGCAAAAGAGGAACCTAGTGTTACGGAATCTATTG ATTCGAAGGCAAATAAGAAGGAAGATGTAGCTGAAACTTCAAAGAATAAGAAGAAGAAAAAGAAGGGTGGAAGGACTGTTCAAGAAGAGGATGATTTGGA CAAGATTCTTGCGGAACTTGGAGTAGCGCCACCTGTTCCGAAGACTTCTGAACCGCCTCCTCCTACAGAGGAGAAAGCTCAGGTCCAACCTGAACCAGTT TCTGAATCAGTTGCTGAAACGGAGGAGAATGATGGCGAAGATGATAAGGAAGAGTCTGCCGCTGCTAAGAAGAGGAGAAAGAAGAAGGAAAAAGAGAAGG AAAAGAAGGCAGCTGCTGCAGTCGCTGCTGCTTCAACAGAGGTTAAGGGAGTAAAAGTGGAGGAATCAAAGAAGCTCCCAAAGCATATTAGAGAGAAACA GGAGTTGCTTGCCAAGCGGCAAGAACTTGAGGCGAAGAAGGCTAGGGAAGAGGAAGAGAAACGGAGAAAGGAAGAGGAGGAAAGACTTAAGCTAGAAGAA CTTGAGAGACAAGCAGAGGAGGCTAAGCGTAGGAAGAAGGAAAAGGAAAAGGAGAAAATCCTGAAGAAGAAGCAGGAGGGGAAATATTTGACCGCAAAAC AGAAGCTCGAACAACAGCGGGCAGAAGCTTTTAAAAAGCAAATTCTTGGTAATAATGCCAATCTTGGACATATTGTTGACAAAGAAGCAGCTCCCACGAA GAGACCGATTTACAAAAACAAAAAGTCAAAATCAGCTCCCAAGCAAGAAAATGGTGCGGCACCTTCTGTTAACGCTGAGGAAGATAAAGAAATAAAGGCA AAGGAAGAAGAGGAAGAAGTTGAAGAAAAGACTGAGGACGTGGAAATAGAACCAGTTGAAGAGAAAATGGAAGTTGCTGATGGCTCAAAAGAAAACGGAG TTGAGGTAGATGATGATGATGACGATGATGAGTGGGATGCAAAGAGCTGGGATGATGTCAACCTTAATGTCAAAGGTGCTTTTGATGACGAGGAGGTTGA GCCTGAGCCTATAGTTAAGAAAGATGCTAAGACAGTCATGCCGGCTGCTAGCAGTGCAGCTCCTGCGGCAGATGCAACCAAAACGCCTGCCTCCTCTCAA GAGAGCAAAGTTCAGGATGTCCAAAGTAGAAAAAGCCAGCCCCAAATTGGGAAGAAAGGTTCTGGTGGTGCCAAAAGTGGAGTGTCAAGTTCAGATGCCC CAGAGCCTGAAGAAAATCTCCGGTCACCAATTTGTTGTATTATGGGCCATGTCGATACTGGTAAGACCAAGCTTCTGGATTGTATTAGAGGGACCAATGT GCAAGAAGGTGAGGCTGGGGGTATCACGCAACAAATTGGTGCAACATACTTCCCTGCTGAGAACATAAGAGAGCGAACTAGAGAACTGAAGGCCGACGCG AAACTGAAGGTCCCTGGTTTGTTGGTTATTGATACCCCTGGCCACGAGTCATTCACCAATCTTCGTTCACGAGGCTCGGGGCTATGCGATATTGCCATAT TAGTTGTTGACATTATGCATGGGTTAGAACCACAAACAATAGAGTCGCTCAATCTCTTGAGAATGAGGAACACGGAATTCATTATTGCCTTAAATAAGGT GGACAGACTGTACGGGTGGAAAGTATGTAAAAATCAACCAATTGTCAAAGCAATGAAGCAACAAGTAAAAGATGTCCAAAACGAGTTCAATATGAGGGTT TCGCAGATCATTACCGAGTTCCAGGAACAAGGACTGAACACTGCATTGTACTACAAGAACAAGGAAATGGGGGAAACTTATAGTATTGTACCGACAAGCG CTCTTAGCGGAGAGGGCATTCCTGATTTATTGCTGCTGTTAGTCCAATGGACTCAAAAAACTATGGTTGAGAAACTCACATTCAGCAATGAAATGCAGTG CACTGTCCTAGAAGTAAAGGTTATTGAGGGCCTTGGAACTACGATTGATGTTGTACTAGTTAATGGCGTGCTTCATGAAGGGGATCAAATTGTTGGACCC ATCGTCACCACTATTAGAGCTCTCTTGACACCTCATCCGATGAAGGAACTCCGCGTTAAGGGCACATATTTACACCACAAGGAAATTAAGGCTGCACAGG GCATCAAAATCTCTGCTCAGGGATTGGAGCATGCTATTGCTGGAACTGGTCTATATGTCGTGGGTCCTGACGATGATTTGGAAGATGTTAAGGAGTCAGC AATGGAAGACATGAAGTCTGTCATGAGCCGCATCGATCGAAGCGGTGAGGGGGTTTATGTACAGGCTTCGACCCTTGGATCGTTAGAAGCTCTGCTGGAG TTCTTGAAGTCACCCTCTGTGAAAATTCCGGTTAGTGGTATAGGAATTGGCCCCGTGCACAAGAAGGATGTCATGAAGGCCAGTGTAATGCTGGAGAAGA AAAAGGAGTATGCTACCATTTTGGCATTCGATGTCAAAGTCACTCCCGAGGCCCGTGAATTAGCAGACGAGTCGGGCGTGAAGATTTTCATCGCCGATAT CATTTACCACTTGTTTGATCAATTCAAGGCCTATATCGACGACCTCAAAGAGGAAAAGAAGAAGGAAGCAGCCGACGAGGCAGTTTTCCCGTGCGTGCTC AAGATTATGCCCAACTGTGTTTTCAACAAGAAAGATCCTATTGTTTTGGGAGTTGATGTTGTTGAAGGAATTGCCAAGGTTGGCACTCCTATATGCATTC CTTCACAAGACTTCATCAACATCGGTAGGATTGCTTCCATTGAGAACAACCATAAGCCAGTTGATACAGCCAAGAAGGGGCAGAAGGTGGCCATTAAGAT AATTGGTTCGAATTCAGAAGAACAGCAGAAGATGTTCGGCAGGCACTTTGATATTGATGACGAACTTGTCAGCCACATTTCCAGGAAATCGATTGATTTA CTGAAAGAAAATTACCGGGATGATCTGTCTAATGAAGAGTGGAGGTTGGTTGTGAAGCTCAAGAACATTTTCAAGATACAGTCGAATGAATCTGTTGGTG CGACGGACGCCAATGCCGGACAAGATCTGCATCGAAGCAACCCTCATCTCAGCCCGCGGCCTAAGGCGTTCCTCTTCCACACTCTGGAAGCGCCACTGGT ACGCAGTCGGCTGGATCGACCCCAAAACCAAGTACTGCACCACCGTATCAAAGGACGGAAGCTCAACGCCCACTTGGAAGACCAAGTTCTCTACTTTACT GGACGAGTCCAGCATTCTAGACTCGGCAGCAGCAATGACTGGTGTTCCTCTTCCACACTCTGGAAGCGCCACTGGTACGCAGTCGGCTGGATCGACCCCA AAACCAAGTACTGCACCACCGTATCCAAGGACGGAAGCTCAACCCCAACTTGGAAGACCAAGTTCGCTACTTTACTCGACGAGTCCACTCTCCTGAAAGA CTCGGCAGCAGCAGCAGCACTGACTGTCCAAGTGTACAGCAGAGAGCCCATCTTCCTCAGGGAATCCCTCGAAGGCACTGCCACCATCTCGCTCAAAGAG TTCGTCTTGAAGTACTATAAGGATAAGGGTTCTTCTTCTGGTGGTGGTGAGGAAGTTGGGAGCTACCAGCTGAGGAAACGGAGCTCGAATCGGAGTCGGG GTTTGGTTGATGTTTCGATTCGGCTTACTGATCAGGAAAGTGCAGATCTTTCCGGTTCTTCGTCATATCCTGGAGGAGATGAAGGAATTGTGCTGAAGGA TTATCATCATGGCAATAACCAACCGCAGATGTTCCCCTTACCCCCATTTCAACAACAGCCTCAGAATCCAACAACATCCACCTCTGCAGGGTTCAATCAT CAAATACCATACTATCCTGCATATCATCATCATCATCCTAATGGTCCTGGAAATCAAGGTTCATATCCAACGATGCCACCTCATCATCAGCCTCAATCGC ACCCTCCAGCGCCTAATGGGGGTTACTACGCACCCACTTTCGTTCCGAATTCGGAGTATGTAAACATGCCAGCATCTGGAGCAACATCAGCAGCACATGG AAGGTGGTCCGGAAGACCCACGGCTGGTAATTTGGCTGCGGGAGCTGGAGTTGGAGGAGCTCTGGCTGCCGGGGCTATGATTTACGGAGACGATTTCATG TCTGCATTTGGCAGCATGTCCTTACAAGATCCCAGTCTTGCCATATCATTAGATCCTCCCTTTCTATGA
AA sequence Show only first row Show all	>Lus10012856 pacid=23162989 polypeptide=Lus10012856 locus=Lus10012856.g ID=Lus10012856.BGIv1.0 annot-version=v1.0 MGRKKPAARGDDDNAPAVSQGGGGKSKKKAFMIDDDEYSVGTELSEESQVQDEKPIITGKKKGKKGDKKNSRAKLESDEDDEVPEISFAGKKKPKGKKSG GTSGFSTSSFGLLGDEDDGDEDEDNEVTAVEDSEDEDEPVVSFAGKKKKSQKGGKSGGSLFSASAFEAIDDGEDDGEVIDKDDEDLAIEFTGKKKSSKGG KKAGNSVVSAAASFDVLDEDENEEEKDDDDDDVSAITFSGKKKKSSKSTKKSDNKFSMALLDDEETVGSTDGKELDDDDEDSSSMAFTGKKKSSKKKGTT SKSTGVFATLVEEKEDVVDDAIAKEEPSVTESIDSKANKKEDVAETSKNKKKKKKGGRTVQEEDDLDKILAELGVAPPVPKTSEPPPPTEEKAQVQPEPV SESVAETEENDGEDDKEESAAAKKRRKKKEKEKEKKAAAAVAAASTEVKGVKVEESKKLPKHIREKQELLAKRQELEAKKAREEEEKRRKEEEERLKLEE LERQAEEAKRRKKEKEKEKILKKKQEGKYLTAKQKLEQQRAEAFKKQILGNNANLGHIVDKEAAPTKRPIYKNKKSKSAPKQENGAAPSVNAEEDKEIKA KEEEEEVEEKTEDVEIEPVEEKMEVADGSKENGVEVDDDDDDDEWDAKSWDDVNLNVKGAFDDEEVEPEPIVKKDAKTVMPAASSAAPAADATKTPASSQ ESKVQDVQSRKSQPQIGKKGSGGAKSGVSSSDAPEPEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADA KLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKVCKNQPIVKAMKQQVKDVQNEFNMRV SQIITEFQEQGLNTALYYKNKEMGETYSIVPTSALSGEGIPDLLLLLVQWTQKTMVEKLTFSNEMQCTVLEVKVIEGLGTTIDVVLVNGVLHEGDQIVGP IVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKISAQGLEHAIAGTGLYVVGPDDDLEDVKESAMEDMKSVMSRIDRSGEGVYVQASTLGSLEALLE FLKSPSVKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADESGVKIFIADIIYHLFDQFKAYIDDLKEEKKKEAADEAVFPCVL KIMPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPSQDFINIGRIASIENNHKPVDTAKKGQKVAIKIIGSNSEEQQKMFGRHFDIDDELVSHISRKSIDL LKENYRDDLSNEEWRLVVKLKNIFKIQSNESVGATDANAGQDLHRSNPHLSPRPKAFLFHTLEAPLVRSRLDRPQNQVLHHRIKGRKLNAHLEDQVLYFT GRVQHSRLGSSNDWCSSSTLWKRHWYAVGWIDPKTKYCTTVSKDGSSTPTWKTKFATLLDESTLLKDSAAAAALTVQVYSREPIFLRESLEGTATISLKE FVLKYYKDKGSSSGGGEEVGSYQLRKRSSNRSRGLVDVSIRLTDQESADLSGSSSYPGGDEGIVLKDYHHGNNQPQMFPLPPFQQQPQNPTTSTSAGFNH QIPYYPAYHHHHPNGPGNQGSYPTMPPHHQPQSHPPAPNGGYYAPTFVPNSEYVNMPASGATSAAHGRWSGRPTAGNLAAGAGVGGALAAGAMIYGDDFM SAFGSMSLQDPSLAISLDPPFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	0	1
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	1.0	0.9953
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	1.4	0.9576
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	3.0	0.9547
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	3.5	0.9482
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10016927 [exp]	4.2	0.9460
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	4.9	0.9461
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	5.3	0.9512
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	6.3	0.9489
AT2G16485			nucleic acid binding;zinc ion ...		Lus10042072 [exp]	6.3	0.9270
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	6.9	0.9421

Compare expression of checked genes

Lus10012856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.