Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56430 390 / 1e-134 unknown protein AT2G40800 379 / 1e-130 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030504 [exp] 567 / 0 AT2G40800 414 / 2e-144 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062200 [exp] 406 / 2e-141 AT2G40800 435 / 2e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012858 pacid=23163040 polypeptide=Lus10012858 locus=Lus10012858.g ID=Lus10012858.BGIv1.0 annot-version=v1.0 ATGTCAAAACCCTCGCACCATAGAATCATCCAAGGTCTTCTCCGCCTCCGTTTCTCTTCGCAATCGACCTCGATCCCTCGATTCCAACAACCTACTTCTT CTTCCCCTTTCTCTACTTCCACTTCCTACCCAAAGTTCTCTCCTTCCACTACGAACCGTACTTTACCGAAGCTCCCAAACTCTTCTTCTTCAACGTTCCT TCCGAGGACTTACTGCTATGGCCTCCGTCACTACTCGTTCAAGCCCTCTCCCGGCGTTGGGAAAGGGATCGGCGGCGGCGAATTCGCCAAACGGGCGTTG GAGAAGCCTGTGGATGTAGTTTCCTCTGCGTTCTCTAAGTACCGAAGAGCATTAGGTTTGCACTTGGATGCATTTTGGAGAAGGAACAATCTGTTTCTGT TTGGGGTTGGAGCTGTGGTGCTGTGTACTTTGCTTTGGAGGGTTATGTTTGGGATTGCCAGCACTTTTGTTCATCTCTCTGAAGGCATGGCCAAGTATGG CTTCCTCGCCCTCTCCACTGCCATGGTTGCCTTTGCTAGTCTATATGTTCGCTCCCGACTCACAATTAACCCTGATAAGGTTTATAGAATGGCTATGAGG CGGCTAAACACGGATGCTGGGATTCTGGAAGTCATGGGTGCTCCTCTCGCTGGAACTGACTTAAGAGCTTATGTGATGTCAGGAGGAGGGATTAAAATGA AGAACTTCAAGCCTACTCGTAGTAACAAGCGTTGTTTCCTTATCTTCCCAGTACAAGGTTCGGAGAGAAAAGGCCTAGTCAGCGTTGAAGTTAAGAAGAA AAAGGGCCAGTATGATATGAGGTTACTGGCAGTGGATGTACCTATGGCATCGGGACCTGACCAGAGGCTGTTTTTGATCGGAGACGAAGATGAGTACAAA ATCGGGGGAGGGATCATCGGCGAGCTGAGAGATCCTGTGGTGAGAGCCATGACTGCTAGCAAGGAATTCGACCACCTTGACGAAATAGAGGAAGAGGAAG ATGCTGAGAGGGAGCTTGAGGAAGCAGAAAGGAAGCGACAGGAGGAACTCGAAAAGCTCGAGAAGGATGGATCATAG
AA sequence Show only first row Show all	>Lus10012858 pacid=23163040 polypeptide=Lus10012858 locus=Lus10012858.g ID=Lus10012858.BGIv1.0 annot-version=v1.0 MSKPSHHRIIQGLLRLRFSSQSTSIPRFQQPTSSSPFSTSTSYPKFSPSTTNRTLPKLPNSSSSTFLPRTYCYGLRHYSFKPSPGVGKGIGGGEFAKRAL EKPVDVVSSAFSKYRRALGLHLDAFWRRNNLFLFGVGAVVLCTLLWRVMFGIASTFVHLSEGMAKYGFLALSTAMVAFASLYVRSRLTINPDKVYRMAMR RLNTDAGILEVMGAPLAGTDLRAYVMSGGGIKMKNFKPTRSNKRCFLIFPVQGSERKGLVSVEVKKKKGQYDMRLLAVDVPMASGPDQRLFLIGDEDEYK IGGGIIGELRDPVVRAMTASKEFDHLDEIEEEEDAERELEEAERKRQEELEKLEKDGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40800			unknown protein		Lus10012858 [exp]	0	1
AT2G40800			unknown protein		Lus10030504 [exp]	2.6	0.9503
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	7.1	0.9374
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10016927 [exp]	8.9	0.9357
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	9.3	0.9394
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	9.6	0.9377
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	9.8	0.9381
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Lus10018468 [exp]	13.9	0.9373
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	14.8	0.9215
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	15.0	0.9353
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	15.5	0.9218

Compare expression of checked genes

Lus10012858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.