Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43360 592 / 0 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43350 587 / 0 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT5G43370 585 / 0 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT2G32830 579 / 0 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT3G54700 568 / 0 PHT1;7 phosphate transporter 1;7 (.1) AT2G38940 561 / 0 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT5G43340 523 / 0 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT1G76430 399 / 2e-133 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 389 / 2e-129 PHT1;8 phosphate transporter 1;8 (.1) AT4G08878 301 / 4e-99 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030506 [exp] 971 / 0 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10027575 [exp] 614 / 0 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10011826 [exp] 576 / 0 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10033886 [exp] 575 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10003560 [exp] 572 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10021191 [exp] 567 / 0 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10014754 [exp] 561 / 0 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10016635 [exp] 558 / 0 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10022548 [exp] 416 / 2e-141 AT3G54700 578 / 0.0 phosphate transporter 1;7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061900 [exp] 778 / 0 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Potri.015G022800 [exp] 609 / 0 AT5G43360 598 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Potri.010G071500 [exp] 583 / 0 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G223600 [exp] 575 / 0 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071600 [exp] 573 / 0 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 563 / 0 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071700 [exp] 558 / 0 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175500 [exp] 554 / 0 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.002G038900 [exp] 551 / 0 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 551 / 0 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10012860 pacid=23162983 polypeptide=Lus10012860 locus=Lus10012860.g ID=Lus10012860.BGIv1.0 annot-version=v1.0 ATGTCTGACGGGACGAAGGCCGTGTTCTCGGCCCTCGACAATGCCAAGACGCAGCTGTACCATTTCAAGGCCATAGTGATTGCAGGAATGGGCTTCTTCA CCGACGCCTACGATCTCTTCTGCATCACTGCCGTTACAAAGCTCATTGGCCGCCTCTACTACTTCGACCCGGCTTCTGGTAAACCCGGCAAGGTCCCAAT CAACATCAACAACGCCATAACCGGGGTTGCCCTCTGCGGAACACTAGCTGGCCAGCTCTTCTTCGGATGGCTTGGAGACAAACTCGGCAGAAAGAAAGTG TACGGAATCACACTTGTCACCATGGTGGGATGCGCTATATGCTCCGGCCTTTCCTTCGGTTCCACATCCAAGAGTGTGATCGGAACCCTTTGCTTCTTCC GATTCTGGCTAGGATTCGGAATAGGAGGGGACTACCCTTTATCAGCTGTGATCATGTCTGAATACTCCAATCAGAAAACCAGAGGAGCGTTCATTGCTGC AGTTTTTGCTATGCAAGGGACTGGAATCCTATTCGCAGCTTTCGTTACACTCGTCGTAACGAAAATCTTCAAGGATAGCAATCCAGCTCCGATCTTCAGC AAAGATGCAGTTTTATCCACTCAGCCTGCAGCAGACTTTGTATGGCGGCTGGTTCTAATGCTGGGAGCAGTTCCTGCAGCATTAACATTCTACTGGAGAA TGAAGATGCCTGAAACCGCAAGGTACACTGCCTTAGTTCAAGGAAATCACAAGAAAGCTGCTAATGACATGGCTAGAGTTCTTCACACGGATTTCTCAGT GGCTCAAGAATCAGACTCAAACAACAATAAATCTCCATCAGCTAGTAACCCTCAATTCGGACTGTTCTCGAATGAGTTTATGAAACGACATGGACTACAT CTCCTAGGCACAACTACGACATGGTTCTTACTAGACATTGCATTCTACAGCCTACAGCTAGCACAGAAAGACGTATACACAGCAAGCGGATTGGTCAACA AGGCTTCAACGATGAATGCTTTAGAGGAGACTTACCAACTGAGCAAGGCTATGACCATAATTGCACTCCTGGCCACCGTTCCTGGCTACTGGTTCACGGT ATACTTCATCGACAAGATCGGGCGTTTCATCATACAGTTGGTGGGTTTCCTTCTGATGGCTATCTGTATGGCGATTCTGGGGGTGAAGTACCACGACGTC AGAGGCGAGAAAGAGTACTGCTTTAACTCCGAAAAGGAATTCTGCGGCGGCAACCGTCTGATGTTCACTGTACTGTTCGCGATGACGCTGTTCTTCGCCA ACTTCGGCCCCAACAGCACGACGTTCATCATTCCGGCGGAGATTTTTCCCGCGAGGTTCCGATCGACGTGCCATGGCATGTCGGCGGCGGCTGGAAAGGC TGGGGCGATACTGGGGGCGTTCGTGGTGCAGAGCTCGACGCAGTCCGGGGATTCGAACGGGATCAAGAAGGCCATGCTCGGGCTGTCCGTTGTGAACTTG TTTGGGTTCTTGTTCACATTCTTGGTTCCGGAGACTAAGGGGAAATCGCTGGAGGAACTTTCTGGCGAGGACAGGGAGCTCGGTGGCGGCGGTGATGAGA AAGTGGTTGCCGTCGATGTGCCGTCGGCGAGTCAGGACGTCGCGTGA
AA sequence Show only first row Show all	>Lus10012860 pacid=23162983 polypeptide=Lus10012860 locus=Lus10012860.g ID=Lus10012860.BGIv1.0 annot-version=v1.0 MSDGTKAVFSALDNAKTQLYHFKAIVIAGMGFFTDAYDLFCITAVTKLIGRLYYFDPASGKPGKVPININNAITGVALCGTLAGQLFFGWLGDKLGRKKV YGITLVTMVGCAICSGLSFGSTSKSVIGTLCFFRFWLGFGIGGDYPLSAVIMSEYSNQKTRGAFIAAVFAMQGTGILFAAFVTLVVTKIFKDSNPAPIFS KDAVLSTQPAADFVWRLVLMLGAVPAALTFYWRMKMPETARYTALVQGNHKKAANDMARVLHTDFSVAQESDSNNNKSPSASNPQFGLFSNEFMKRHGLH LLGTTTTWFLLDIAFYSLQLAQKDVYTASGLVNKASTMNALEETYQLSKAMTIIALLATVPGYWFTVYFIDKIGRFIIQLVGFLLMAICMAILGVKYHDV RGEKEYCFNSEKEFCGGNRLMFTVLFAMTLFFANFGPNSTTFIIPAEIFPARFRSTCHGMSAAAGKAGAILGAFVVQSSTQSGDSNGIKKAMLGLSVVNL FGFLFTFLVPETKGKSLEELSGEDRELGGGGDEKVVAVDVPSASQDVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10012860 [exp]	0	1
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10034635 [exp]	11.6	0.6927
AT3G24130			Pectin lyase-like superfamily ...		Lus10007136 [exp]	13.4	0.6550
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10014199 [exp]	14.4	0.6254
					Lus10010925 [exp]	19.6	0.6854
AT1G32730			unknown protein		Lus10011037 [exp]	29.7	0.6402
AT4G38790			ER lumen protein retaining rec...		Lus10026285 [exp]	30.1	0.6841
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10039717 [exp]	38.1	0.6515
					Lus10018446 [exp]	38.5	0.6452
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10008589 [exp]	88.0	0.6209
AT1G54410			dehydrin family protein (.1)		Lus10020271 [exp]	119.3	0.5673

Compare expression of checked genes

Lus10012860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.