Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05180 98 / 3e-22 unknown protein AT2G30500 66 / 1e-11 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 48 / 1e-05 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT3G10880 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030507 [exp] 600 / 0 AT5G05180 120 / 3e-30 unknown protein Lus10029012 [exp] 295 / 1e-95 AT5G05180 146 / 5e-39 unknown protein Lus10034251 [exp] 272 / 6e-87 AT5G05180 149 / 4e-40 unknown protein Lus10012862 [exp] 189 / 4e-58 ND 37 / 0.008 Lus10034448 [exp] 58 / 7e-09 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10019111 [exp] 57 / 2e-08 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061600 [exp] 182 / 9e-52 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.013G158100 [exp] 103 / 8e-24 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 81 / 5e-16 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.001G094266 [exp] 44 / 4e-05 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1) Potri.003G137300 [exp] 44 / 0.0001 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012861 pacid=23163054 polypeptide=Lus10012861 locus=Lus10012861.g ID=Lus10012861.BGIv1.0 annot-version=v1.0 ATGGAAGTGGGGGCCGCCGCGCCGGTGGTGGAGAATGCCGGTATGGATCGGAGTGAATATGTTGTCTCTCCTGTGAAGTTTCAACAGATGATGCCTAAAT TGATTCCGGAGGTGGATCAAGTCTACCCCACTTATGATTCTGATACTTCTTTGCTGACTCCTGATGCAAAGGTGGCTGGAAACAAGGTTCATCAAGTTGA TTCTGCAAGTTCTGGTGGTGCTAATAGCTCTGACCTGTCCTTAAAGGAAGGATCTGAATCATCATCTCTATCGCTATCAGATTCCGACTCGGAATCTTCC AACTCCACAAATGCTTACAATAGCCTTTCTATGAACACTGACAAGAAAGGAATGTTTTTCCAGACTGAAGAGAAGAAGAAGGCTACTTACGAAGAACTGC TCAAGAAAGTGGCGGTGTACGAGGACGAAATCAAAGTTTCGAATCTGAGATGGCAGAAGTCGGAGGAAGAGGTGTTCTGGTTGAAGACTGAGCTAAGAAA GGGTGCAGAAACTTTGCAGTCTCGACTCGAATATGCTTATGGAGAGATTGACGACAAGGAGGCTGATCTCAAAACAGAGAAGAGAAGAGTCTTGGAGCTT GAAACCAAATTAGCCGAGGATTCATGGCTAGCGCAGAACCAGATAAAACTGGCTCGAGAAGAGATTGAAGCATTGAAAGCTGAGCTCAGTTTCGAAAGGA AGCAAGTCACAGCATTGGAAGAAAGCAATTCAAGCTACAGAACACTACATGTGTCGTCGGAACACAAGCTGACACAATGCGAAGCTGAGAAGATGAAAAT GAAAACGTCTTATGATGCTCAGGAGATTCAGTTTCGAGGCGAGATTAGTCGGTTGAAGGTCGATCTTAACTGCAGAGCTGTACAGGTGGAGGGGTTAATA AAGAGCTATGATACGGTTAAGGCTGAGAGAGACGAGTCGAATGCCAAGGTGGACAGAATGAGAGATGAGATTCATAACCAGGAGATTCAGAAGAAAGATA TGGAGGAGAATCTAGGAAAGCTGAATCTCAAAAACGGGGAGATGGTAGAGGAACTGAGGTTGAGGGCTGTGGAGCTTGAGAAGGAGGTGGATAGGCAGAC TGGTGAGATCTTAGCCATGGCTGAGGAGAAAAGGGAGGCAATTAGACAGCTTTGCTTCTCTTTGGAGCATTACAGGAGTGATTACAGAGAGCTTCGTGAA GCCGTTGTTGGCCAGAAAAGGGTTCGAGTTGTAGCTTAG
AA sequence Show only first row Show all	>Lus10012861 pacid=23163054 polypeptide=Lus10012861 locus=Lus10012861.g ID=Lus10012861.BGIv1.0 annot-version=v1.0 MEVGAAAPVVENAGMDRSEYVVSPVKFQQMMPKLIPEVDQVYPTYDSDTSLLTPDAKVAGNKVHQVDSASSGGANSSDLSLKEGSESSSLSLSDSDSESS NSTNAYNSLSMNTDKKGMFFQTEEKKKATYEELLKKVAVYEDEIKVSNLRWQKSEEEVFWLKTELRKGAETLQSRLEYAYGEIDDKEADLKTEKRRVLEL ETKLAEDSWLAQNQIKLAREEIEALKAELSFERKQVTALEESNSSYRTLHVSSEHKLTQCEAEKMKMKTSYDAQEIQFRGEISRLKVDLNCRAVQVEGLI KSYDTVKAERDESNAKVDRMRDEIHNQEIQKKDMEENLGKLNLKNGEMVEELRLRAVELEKEVDRQTGEILAMAEEKREAIRQLCFSLEHYRSDYRELRE AVVGQKRVRVVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05180			unknown protein		Lus10012861 [exp]	0	1
AT5G05180			unknown protein		Lus10030507 [exp]	1.0	0.9348
AT3G13275			unknown protein		Lus10007090 [exp]	4.9	0.8461
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10016156 [exp]	8.0	0.8509
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10003751 [exp]	16.1	0.8063
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10034489 [exp]	23.8	0.7956
AT5G06430			Thioredoxin superfamily protei...		Lus10021764 [exp]	26.6	0.6841
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10035209 [exp]	27.4	0.8090
AT5G41685			Mitochondrial outer membrane t...		Lus10004754 [exp]	32.6	0.7205
AT4G17240			unknown protein		Lus10039062 [exp]	33.5	0.8095
AT3G20395			RING/U-box superfamily protein...		Lus10040073 [exp]	34.6	0.7396

Compare expression of checked genes

Lus10012861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.