Plant FIBer expression Database

Lus10012862 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030507
[exp]
196 / 5e-61 AT5G05180 120 / 3e-30 unknown protein
Lus10012861
[exp]
188 / 5e-58 AT5G05180 124 / 2e-31 unknown protein
Lus10029012
[exp]
135 / 3e-37 AT5G05180 146 / 5e-39 unknown protein
Lus10034251
[exp]
133 / 1e-36 AT5G05180 149 / 4e-40 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G061600
[exp]
92 / 1e-21 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
PFAM info
Representative CDS sequence
>Lus10012862 pacid=23162973 polypeptide=Lus10012862 locus=Lus10012862.g ID=Lus10012862.BGIv1.0 annot-version=v1.0
ATGCCTTCTCTACATTTCGAGTTTGATCATTTCACCTCTGTTCTCTCAGCCGCCTCATCACAGTCCCTGGTAATGACAGATCAGCAAGGTATGGATCATA
AAGAACTGCTCGAGAAAGTGTTGAAGTATGAGGATGAGATAACGGTTTCAAATCTGAGATTACAGAAGTCGGTATTCGAGTTGAAGACTGAGCTAAGAAA
GGGGATAGGAGCTTTGCAGTCTCAACTCGAATCTGCATGTAGGGAGGTTAAGGACAAGGTGTCTGATCTCGAAACAGAGAAGAGAAGAGTTGTGGAGCTT
GAAACCAAATTAGCTGACGCTTCATGGCAAGCGCAGAACCAGATTAAGCTGGCTCGAGGAGAGATCGAAGCGTTGAAAGCTGAGCTCACTTCTGAAAGGA
AACAAGTGGCAACATTGGAAGAAAGCAATTCGAGGTACAGAAGCCAACAGGACTCGCTGGAGGCAAGCATCCGGGAGCTGAAAACATTACATGCATCGTT
GGAACACAAGCTGACACAATGTGAAGCTGAAAAGATCCAAGTGAAGAAGTCGTGCGATGGTCAGGAGATTCAGCTTCGATTATTCAAGAGGGGGGCTGGT
TCGTTTAGAAATTTGGGTATGCAGGAGGAGGATAATAAGCTGAGGTGA
AA sequence
>Lus10012862 pacid=23162973 polypeptide=Lus10012862 locus=Lus10012862.g ID=Lus10012862.BGIv1.0 annot-version=v1.0
MPSLHFEFDHFTSVLSAASSQSLVMTDQQGMDHKELLEKVLKYEDEITVSNLRLQKSVFELKTELRKGIGALQSQLESACREVKDKVSDLETEKRRVVEL
ETKLADASWQAQNQIKLARGEIEALKAELTSERKQVATLEESNSRYRSQQDSLEASIRELKTLHASLEHKLTQCEAEKIQVKKSCDGQEIQLRLFKRGAG
SFRNLGMQEEDNKLR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10012862
[exp]
0 1
AT1G15000 SCPL50 serine carboxypeptidase-like 5... Lus10042334
[exp]
20.5 0.7433
AT5G66040 STR16 sulfurtransferase protein 16 (... Lus10005635
[exp]
20.5 0.7831
AT5G42785 unknown protein Lus10001961
[exp]
23.2 0.7516
AT5G59190 subtilase family protein (.1) Lus10040251
[exp]
30.4 0.7154
AT1G49430 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, lo... Lus10023832
[exp]
39.9 0.6985
AT4G33790 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIF... Lus10020584
[exp]
40.2 0.7244
AT4G30630 unknown protein Lus10026889
[exp]
56.3 0.6335
AT3G11980 FAR2, MS2 MALE STERILITY 2, FATTY ACID R... Lus10015974
[exp]
56.9 0.6268
AT5G15630 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4... Lus10034666
[exp]
62.6 0.7294
AT2G46570 LAC6 laccase 6 (.1) Lus10030235
[exp]
75.6 0.6920

Lus10012862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.