Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05190 107 / 6e-24 Protein of unknown function (DUF3133) (.1) AT3G56410 73 / 7e-13 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2) AT1G01440 64 / 3e-10 Protein of unknown function (DUF3133) (.1) AT3G61670 63 / 7e-10 Protein of unknown function (DUF3133) (.1) AT4G01090 61 / 3e-09 Protein of unknown function (DUF3133) (.1) AT2G46380 60 / 6e-09 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030508 [exp] 1298 / 0 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10034250 [exp] 114 / 1e-26 AT5G05190 68 / 4e-12 Protein of unknown function (DUF3133) (.1) Lus10029013 [exp] 105 / 4e-24 AT5G05190 64 / 6e-11 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 57 / 4e-08 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 55 / 3e-07 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 55 / 3e-07 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10001910 [exp] 52 / 3e-06 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061400 [exp] 256 / 1e-71 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.014G095700 [exp] 67 / 6e-11 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.003G137700 [exp] 57 / 4e-08 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 53 / 8e-07 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF11331 [flax] [poplar] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10012863 pacid=23162975 polypeptide=Lus10012863 locus=Lus10012863.g ID=Lus10012863.BGIv1.0 annot-version=v1.0 ATGGCGAGTGTAGAAAATGGAGGAGCAGCGGCGCCGAAGATAAGGCTGGTACAGTGTCCAAGATGTAGACAGATTTTGCGTGAGCTGCCCAATGTTCCTG TTTACCAGTGCGGCGGATGCGGCATCCACCTCCAAGCCAAAATTCGGCCGCGAAATGGGGAAACCAATTCTACATCGGCTGATTCTGCCCGGTTGAGTAG ATTGGAATCCACTGGCAGCAGCTCTGTTCATCTACAGCCTGATGTTCCTCCAGATTCCTCTGTTAAGTTGAATGACGATGGGGAGGCTGGGGGATCGAAT TCGGTGGTAGACCGCGAATTATCCGTGAAAGATCAAGTGGTGGAGGATGATGAGGTTGCTGCTCATGGTGGCAATTCAGCTTGCAGTGTTGATAGTACTA CTTCGGTTGATGATGCTAATGATGATGGTGTTAAGTTGATTGATGATGGGGAAACCGGGGGATCGGATCATGATGAAATCGAAGAAATAAGCAAAGATGA ATGTGGTGATCAGCAGGTGGAGGATGAAGTTGCTGCTCATGGTGAAAATGCAGCTTACAGTACTGATCATAGTACTACTTCTGCTGAGAAGCAGGAAATG TCTCCAGATGTCGGAGTGGATTCCGAATCAGAAGTCAGCATTGAAATTCCGAAGGTATTTTCCATGCTTGAGGATCATTCGGAAGCGAGAAGATCGAGCA GTGATAACGTCAACGAAGAAACTATAGAAGCTGCTTCGACAGTTATTGCGATTAGACCAGCATCAGCATCAATATCTGGAGGAGTTCTCGCGTCTCCTCC TAATCGGATGCAGGAAAGGGTGCGTTTTGATCCTGTTCATAATGCAGATACATTAGAAGAAGCTGATGATTTCGTCAGTTCGGAGCTAAGTGGAATGCTT GTGGATTTGACGAAATCTCCAACTACTAGAAGTTGTCATGCTTATTACGATGGAATCTCCGAGGGGACTGATGATCAGGTTCCTGGTCGACTGAGACCTT ATTCGAGGAATGCTCAAGTTCATAAGCCTGAAAGCTATATGATAGCTGAAGAAAAAGCAGAAAGTGCTAGGAATAACTTGGGATTGCAGTACCAGCAGAA GAAATATCATTCACCAGATATGGATTTGGATTCAGATTATGTCCTCCCTAGTAGGAAAAACTTGGAATTCCAGTATCAGCAGAAGAAATATCATTCCCCA GATACGAATTTGGATTCGGAAGAGCTGCGAGGGGTTGCAGTACTGAACAATCCTGTTAAAAGTTGGGGGAGGTTGGAAAGTGATGACGAACTTCCAAGGA ATTCGTACATGAATGGCTACGAAAGTGGCAGCACCTTGTACCAATCGCAGAGTGGATTGCGTAGCAACTTAAGCTCCCATCCGCGAGTTAATGCAGCCGA TATTGAGCAGGAGAGGATCAGATTGCTGAGAATGGTCTACGAGTTGGAGGATCAACTCACCAGATCCTGCTCTCTGAATAATAATGTTAGTAGAACGGTC TTTTCGGGAAATGTTCGAAGGGATGATGAACATGTTCCTTTTAATTATGGTACGGATCGCAGACCGTATAGTCGAGAGATTACCAGCTGGTCTCAGCAGC AGCAAAGACAGCCTTCAAGAATTCCATTCTCTGCTGAAGTTGATAATCACTCTTCTTGTTGCAACCGTCAGGAATGGAAATGTTCGGGCCAACTGCCAAC GCATTGCTTGAATCACAACAGGGTATTCTGCAGGGCGCACTCCGGTTTGAGTTCGTGCAATTCGTATGGCTCTTGTCCCTCGAGTCCTCAGAGATGCGCA GGCTCCGAGTATTCTTCTTCTTCCATTCATCATGGCCGGGCGACAATGTCCTGCGAGCAAAGGCACGGTAGAGATAGCCGCGATTTAAACAGGTACATTC GGGAGAAGCAGCACTTCACTGGCGCTGCGAAGAAGAAGAGGCATATTCGTCCAATAGCCGGTGGAGCACCGTTATTAGCTTGCCATTTTTGCTTGAAACA GCTGCAACTGCCTGCGGATTTCCTCGTGTCGAAACGTAAATCCCATACGCTGAAGTGTGGCGCTTGCTCTGAGATACTCAAGTTCTCTCTGGTAAACAAG ACTCATCTCGTCCCAAACTTCACCGAGGAGGAGGATCATGCTCCTCGCCGTACATCCTTCCACCATGCAGCATCTCGCAGCATGGCGAATTCGTCATCTG GTTCGTTTAAACACGGTGAACAACGACAACAAAACAAGGCCATAATACCGGACAAGCTCATCAAAAGCAACGGTAAAAGTCCAGTGGAAACACACCATGG CACTGGACCTTCGTACAGTCCAAAGAACGATAAAGAGGAGATACAAGGAAGAGGCGGCTCGCCTCTTCATCGACTGATGGGGTACTCCACCTTAAGTGGC GTCCTGCGGCGTAACTGA
AA sequence Show only first row Show all	>Lus10012863 pacid=23162975 polypeptide=Lus10012863 locus=Lus10012863.g ID=Lus10012863.BGIv1.0 annot-version=v1.0 MASVENGGAAAPKIRLVQCPRCRQILRELPNVPVYQCGGCGIHLQAKIRPRNGETNSTSADSARLSRLESTGSSSVHLQPDVPPDSSVKLNDDGEAGGSN SVVDRELSVKDQVVEDDEVAAHGGNSACSVDSTTSVDDANDDGVKLIDDGETGGSDHDEIEEISKDECGDQQVEDEVAAHGENAAYSTDHSTTSAEKQEM SPDVGVDSESEVSIEIPKVFSMLEDHSEARRSSSDNVNEETIEAASTVIAIRPASASISGGVLASPPNRMQERVRFDPVHNADTLEEADDFVSSELSGML VDLTKSPTTRSCHAYYDGISEGTDDQVPGRLRPYSRNAQVHKPESYMIAEEKAESARNNLGLQYQQKKYHSPDMDLDSDYVLPSRKNLEFQYQQKKYHSP DTNLDSEELRGVAVLNNPVKSWGRLESDDELPRNSYMNGYESGSTLYQSQSGLRSNLSSHPRVNAADIEQERIRLLRMVYELEDQLTRSCSLNNNVSRTV FSGNVRRDDEHVPFNYGTDRRPYSREITSWSQQQQRQPSRIPFSAEVDNHSSCCNRQEWKCSGQLPTHCLNHNRVFCRAHSGLSSCNSYGSCPSSPQRCA GSEYSSSSIHHGRATMSCEQRHGRDSRDLNRYIREKQHFTGAAKKKRHIRPIAGGAPLLACHFCLKQLQLPADFLVSKRKSHTLKCGACSEILKFSLVNK THLVPNFTEEEDHAPRRTSFHHAASRSMANSSSGSFKHGEQRQQNKAIIPDKLIKSNGKSPVETHHGTGPSYSPKNDKEEIQGRGGSPLHRLMGYSTLSG VLRRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05190			Protein of unknown function (D...		Lus10012863 [exp]	0	1
AT2G26530		AR781	Protein of unknown function (D...		Lus10006479 [exp]	15.9	0.6758
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	16.9	0.6747
AT2G30630			P-loop containing nucleoside t...		Lus10021885 [exp]	41.6	0.6532
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	45.0	0.6516
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	46.6	0.6500
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	72.3	0.6313
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	74.8	0.6103
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039772 [exp]	86.3	0.5816
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039720 [exp]	105.5	0.5898
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	111.2	0.5981

Compare expression of checked genes

Lus10012863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.