Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05200 141 / 4e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030509 [exp] 181 / 9e-56 AT5G05200 796 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061300 [exp] 152 / 6e-45 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1) Potri.013G090000 [exp] 50 / 2e-08 AT3G26580 323 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012864 pacid=23163049 polypeptide=Lus10012864 locus=Lus10012864.g ID=Lus10012864.BGIv1.0 annot-version=v1.0 ATGGACACGGAAATAGTAGTGGCAACGGCCAGAGATGGCAGTACAAATGCAACTGCGGTCGCTGCCAATGTGATGGTTGACGAAAGGCAGATGAACGCCC TTTTTCTCGACGTGGTGCGGGTGAGCGAATCGTATGGACTCAGATTCCCCAGGGAGTTTGCTCTTCTCCTGAAGCAACTCCTTTATTTCGACCGGTACAC ACGGTTGCTGGCACCCAACATGAACATGCTTCAGGACCAAAGAGTCACCATAGTCTCGAACCGCGGAAACCGGTACAGAGACAGCAGCTTCAACTATTAA
AA sequence Show only first row Show all	>Lus10012864 pacid=23163049 polypeptide=Lus10012864 locus=Lus10012864.g ID=Lus10012864.BGIv1.0 annot-version=v1.0 MDTEIVVATARDGSTNATAVAANVMVDERQMNALFLDVVRVSESYGLRFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRVTIVSNRGNRYRDSSFNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	0	1
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	2.0	0.9337
AT3G09970			Calcineurin-like metallo-phosp...		Lus10014383 [exp]	3.3	0.9095
AT5G66440			unknown protein		Lus10042306 [exp]	5.3	0.9124
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	5.7	0.9113
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	6.7	0.9171
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	7.2	0.9209
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	8.1	0.9126
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	8.7	0.9018
AT4G38225			unknown protein		Lus10026560 [exp]	9.2	0.9087
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	9.6	0.9205

Compare expression of checked genes

Lus10012864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.