Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05200 645 / 0 Protein kinase superfamily protein (.1) AT4G31390 154 / 2e-40 Protein kinase superfamily protein (.1.2) AT5G64940 154 / 5e-40 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT4G24810 148 / 2e-39 Protein kinase superfamily protein (.1.2.3) AT3G07700 149 / 2e-38 Protein kinase superfamily protein (.1.2.3) AT1G79600 147 / 5e-38 Protein kinase superfamily protein (.1) AT5G50330 140 / 2e-36 Protein kinase superfamily protein (.1.2) AT1G71810 133 / 4e-33 Protein kinase superfamily protein (.1) AT3G24190 133 / 5e-33 Protein kinase superfamily protein (.1) AT2G39190 124 / 5e-30 ATATH8 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030509 [exp] 838 / 0 AT5G05200 796 / 0.0 Protein kinase superfamily protein (.1) Lus10035701 [exp] 155 / 2e-40 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10036636 [exp] 154 / 5e-40 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10020152 [exp] 151 / 4e-39 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006363 [exp] 148 / 5e-38 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 145 / 5e-37 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035853 [exp] 140 / 1e-35 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10032628 [exp] 139 / 2e-35 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10043122 [exp] 132 / 5e-33 AT4G24810 696 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061300 [exp] 659 / 0 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 162 / 3e-43 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G083200 [exp] 155 / 9e-41 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.015G091000 [exp] 148 / 3e-39 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G082500 [exp] 151 / 4e-39 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.012G093600 [exp] 147 / 5e-39 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.014G168600 [exp] 140 / 1e-35 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G000100 [exp] 134 / 3e-33 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 132 / 7e-33 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 127 / 3e-31 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10012865 pacid=23163032 polypeptide=Lus10012865 locus=Lus10012865.g ID=Lus10012865.BGIv1.0 annot-version=v1.0 ATGATCTCAGCTCCTGCTCTGAGAGGAGGCTCTCGTTTCACTTTCTCCAACCCTTTCCCGATTCCTTGCCTCAGCAGCTATCGGGTAAAATTATCACAGT CGTCACTCGGTAATAAGAGATTGAGAAGTCCTGCAAAACCCTTCACCATTTTTGCCCAGTATTCTCAAACTCAGTCTCAGACGCCCTTCTCTTCAAGTCG TCTCCAAGATAGCCTAGAGAACTTGCCGAAACTGGTGGAGGATATCATACAAACATCCATTAGCACCGGTCCACGTGGAGCTCTGAGGTTTGCGCAAGGT GTTCAAGCAGTCGTTGGAGTTGGCAGTGAATGGCTTCAAGATGTATCACGGTCGGCAAATTCGCCTGGCGGGTTGCCTGTTGACATGAGGCTTGGAGTGC TTTCGCCGGTATATTTAAGGAAATTGTTTGAACGTATGGGAGCAACTTATGTTAAATTGGGCCAGTTTGTAGCATCTGCGCCAACATTGTTCCCGCCAGA GTACGTTGAGGAATTTCAAAAGTGTTTCGATAGAGCTCCAACTATTCCATTCCAACAAATTCAGGCAATATTGCGTGAGGAACTCGGAAGACCAATAGAC GCTGTATATGAGTATGTGGACCCAACCCCAATCGCCTCAGCCTCCATAGCGCAGGTGCATGGTGCAAGACTCAAAGGCTCCCAGGAGGATGTGGTGATAA AGGTTCTGAAACCAGGGATAGAAGATATTTTAGTGGCAGATTTGAACTTCATATATATCATTGCCCGCATATTTGAGTTCTTAAGTCCCGAGTTCAGCCG TACATCACTGGTTGGTATTGTCAAAGACATAAGGGCATCCATGCTTGAAGAAGTTGACTTTACCAAGGAAGCTGCGAACATCGAGTCCTTTAGAAGATAT TTAGAATCGATGGGACTCACGAGACAAGCCACTGCTCCAAAAGTATATCACCATTGCAGCAGCCGCAGAGTTCTGACGATGGAGAGACTGTATGGAGTGC CACTTACCGATCTAGACTCTATAAGCTCCCTTGTGGTGGATCCGGAAGCAAGCCTTATTACTGCTCTTAATGTGTGGTTTGGTAGTCTTCTAGCATGTGA AAGTTTCCATGCAGATGTACATGCAGGAAACCTGTGGTTACTCCGTGATGGTCGGATTGGGTTTCTTGATTTTGGTGTTATCTTTCTGAACAAAAGTAAC TACTGGTATCCAGGAATCGTTGGACGCATATCCCCGAAGACATGGGAAGCTATGGAAGTGTTTCTAGGATCAATTGCAACCGAAGAATATGAATCAATGG CTTCTGCACTGACTGAGATGGGTGCTACAAACAAAAGCGTTGACACCAAGGCCTTTGCAAGAGACTTGGAGAAAATATTCTCATCTATAAAGGCAAAGCA TTTCTCTTTTTCCTTTAACTCAATACCCTTCCTGAAACTAATAGGACTGCCTGCCTGA
AA sequence Show only first row Show all	>Lus10012865 pacid=23163032 polypeptide=Lus10012865 locus=Lus10012865.g ID=Lus10012865.BGIv1.0 annot-version=v1.0 MISAPALRGGSRFTFSNPFPIPCLSSYRVKLSQSSLGNKRLRSPAKPFTIFAQYSQTQSQTPFSSSRLQDSLENLPKLVEDIIQTSISTGPRGALRFAQG VQAVVGVGSEWLQDVSRSANSPGGLPVDMRLGVLSPVYLRKLFERMGATYVKLGQFVASAPTLFPPEYVEEFQKCFDRAPTIPFQQIQAILREELGRPID AVYEYVDPTPIASASIAQVHGARLKGSQEDVVIKVLKPGIEDILVADLNFIYIIARIFEFLSPEFSRTSLVGIVKDIRASMLEEVDFTKEAANIESFRRY LESMGLTRQATAPKVYHHCSSRRVLTMERLYGVPLTDLDSISSLVVDPEASLITALNVWFGSLLACESFHADVHAGNLWLLRDGRIGFLDFGVIFLNKSN YWYPGIVGRISPKTWEAMEVFLGSIATEEYESMASALTEMGATNKSVDTKAFARDLEKIFSSIKAKHFSFSFNSIPFLKLIGLPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	1.4	0.9239
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	1.7	0.9280
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	2.0	0.9220
AT5G06470			Glutaredoxin family protein (....		Lus10021255 [exp]	2.8	0.8843
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	3.9	0.9235
AT3G16940	CAMTA		calmodulin binding;transcripti...		Lus10016873 [exp]	4.2	0.8661
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	4.7	0.8807
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	5.9	0.9108
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	6.5	0.8914
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	7.3	0.8951

Compare expression of checked genes

Lus10012865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.