Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24550 434 / 2e-145 BGLU32 beta glucosidase 32 (.1) AT3G60140 420 / 2e-139 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT2G44480 416 / 1e-138 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 409 / 5e-136 BGLU15 beta glucosidase 15 (.1) AT3G60120 407 / 6e-135 BGLU27 beta glucosidase 27 (.1) AT5G24540 407 / 1e-134 BGLU31 beta glucosidase 31 (.1) AT5G44640 405 / 1e-134 BGLU13 beta glucosidase 13 (.1) AT5G42260 405 / 3e-134 BGLU12 beta glucosidase 12 (.1) AT2G44470 407 / 5e-134 BGLU29 beta glucosidase 29 (.1.2.3) AT2G32860 402 / 9e-132 BGLU33 beta glucosidase 33 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012871 [exp] 969 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10030518 [exp] 919 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10012869 [exp] 856 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10030577 [exp] 812 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10030516 [exp] 801 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10030911 [exp] 785 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10039513 [exp] 773 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10024152 [exp] 756 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10011828 [exp] 706 / 0 AT2G44480 438 / 4e-146 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 479 / 3e-163 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 474 / 2e-161 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 474 / 1e-160 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.T085301 [exp] 457 / 2e-154 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 456 / 3e-154 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G223300 [exp] 446 / 3e-150 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 444 / 1e-149 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 444 / 1e-149 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 444 / 2e-149 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 442 / 1e-148 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10012868 pacid=23163042 polypeptide=Lus10012868 locus=Lus10012868.g ID=Lus10012868.BGIv1.0 annot-version=v1.0 ATGCAATTGTTTGGTTCATGTGGTCCACCCGTAATCTCTGCATATTTGAAGACAAGCGGGTGTGAAATGCTGATATTATTAGGAAGGTTATTGGTTCTAT CGTTTATGGTTGGGTTAAAGCTCATGATCTGGCAACTGGCGGGGATAGCCGTTGGTGGATCCAGCGCTGCATCAGTTTCCACCCTCCCTAGCTCTTTGTT TTCAATTTCTTGTGTTTGCAGCTTTTGTGTGGACTGGAGATATGGTTTAAATGAGTATGCTGGCAGCTGTTTCCCTCCTGGCTTTATCTTTGGCACCGCC ACTTCTTCGTTTCAGATTGAGGGAGCTCCAAATTTTGCGTACGGGAAAGGTCCGAGCATCTGGGACAGATTTACCCATCGGCATCCAGGTTTGTGCGAAT TTAGGGCTTTGATCGATTTCTCAACGAAAACGTCGCCGCTCGATTTTCTTGCTGATGATGTTGATTCATTTGTTGCAGATTGGATTTTAGAAGGAGGCAA TGGTGATGTAGCAATAGATCATTATCACAAGTACAAGGTAGCTGCTGGTAGCCCTCTGATATTAGCTGATGATGGTGATCCTTGCTCAGCCTCCACCTAC GTATACAAACCCTCGCCGGAGCTTCCCAAGGGCCGTTACGAATTCCCTGATGACTTTATCTTCGGCACTGCCACTTCTTCCTATCAGATTGAAGGGGCTC ATGATTTTACGTTCGGAAAGGGTCCCAGCACCTGGGATAGGTTTACCCATAGCTACCCAGATAGGATTCTAGGAGGCGGTAATGGAGATGTGGCATTGGA TCATTATCACAAGTACATGGAAGATATAGGCAAAATGAAATATTTGAATGTGGATGCATACCGATTCTCCATCTCATGGCCTCGAATCATACCATCTGGC AAGAGAAGTGACGGAGTAAATCAAGAAGGAATTAATTTTTACCACACCCTCCTGGATGCACTCAATGCAAACGGAATCAAAGCTTTTGTGACAATGTATC ATTGGGAAACCCCGCAAGGTCTGGAAGCTGAGTATGGTGGCTTTCTCAGTCGCAACATTGTGAAGGACTTTGAGGATTACAGCGATCTCTTGTTTCAAGA ATATGGTTCAAAAGTGTATAAATGGATAACTCTAAATGAGCCTATGGGTAACTCGATGAAGTCTTACGATGAAGGAGTTTTTGCACCGGGGCATTGTTCT GTGTGGGTAGACAGAAAATGCCGACTTGGAGATTCATCAACCGAACCTTACATTGTTACTCACAATCAACTTCTTGCTCATTCCGCCGCTTATCACTTGT ACAAAACCAAATACACGAATCTTACTGCTGAGATAGGAATAACTCTTGTCACACATTGGTTTCTTCCTTACGATAATACATCATCAAAAGACATTGATGC TGCTCAAAGAGCTTTGGACTGGTTGTATGGTTGGTACATGGATCCACTAACCTATGGTTACTACCCTAGAACCATGGTAGATTTATTGGGATCTCGTTTA CCCCAATTCACACAAGAGGAATCACACTTGCTTAAAAAGTCATTCGACTTTTTGGGCCTCAATTATTACACCGGTTATTATGTCAAGAACGTTAACGATG ATGATTTTGATCAAGTTCATCTGCGATATGCAACTGATCACCACGGCATTACTACACCCGACAGAGACGGAGAGTACATTGGACCACATTTGGGGTCATA CTGGCAGTATCTGTATCCTGAAGGTCTACGAGTGCTATTAGAGTACACTAAGGAAAAATATGATGATCCAATCATCTACATCACGGAGAATGGTACCGAG AGCCAGGTGAATGTGAAGGGATACTTTGCATGGTCGTACGCCGACAACTTCGAATGGAACGAGGGATTCACAGTTAGGTTTGGGTTGTACTACGTCAACT ACACCGATCTCTCCAGACACCCCAAGAACTCTGCTTGCTGGTTCACCAATTTCGCCAGCAAGACCAGTCCCAAGTCCTCATTATTTAACTATTTTGATCT CGATCAGCTCATCGCTGCTCGCGTTGCTCTTGGAGGTCGTCGGGCTCTCTCTTCCGCTGGCCGCCCTTAA
AA sequence Show only first row Show all	>Lus10012868 pacid=23163042 polypeptide=Lus10012868 locus=Lus10012868.g ID=Lus10012868.BGIv1.0 annot-version=v1.0 MQLFGSCGPPVISAYLKTSGCEMLILLGRLLVLSFMVGLKLMIWQLAGIAVGGSSAASVSTLPSSLFSISCVCSFCVDWRYGLNEYAGSCFPPGFIFGTA TSSFQIEGAPNFAYGKGPSIWDRFTHRHPGLCEFRALIDFSTKTSPLDFLADDVDSFVADWILEGGNGDVAIDHYHKYKVAAGSPLILADDGDPCSASTY VYKPSPELPKGRYEFPDDFIFGTATSSYQIEGAHDFTFGKGPSTWDRFTHSYPDRILGGGNGDVALDHYHKYMEDIGKMKYLNVDAYRFSISWPRIIPSG KRSDGVNQEGINFYHTLLDALNANGIKAFVTMYHWETPQGLEAEYGGFLSRNIVKDFEDYSDLLFQEYGSKVYKWITLNEPMGNSMKSYDEGVFAPGHCS VWVDRKCRLGDSSTEPYIVTHNQLLAHSAAYHLYKTKYTNLTAEIGITLVTHWFLPYDNTSSKDIDAAQRALDWLYGWYMDPLTYGYYPRTMVDLLGSRL PQFTQEESHLLKKSFDFLGLNYYTGYYVKNVNDDDFDQVHLRYATDHHGITTPDRDGEYIGPHLGSYWQYLYPEGLRVLLEYTKEKYDDPIIYITENGTE SQVNVKGYFAWSYADNFEWNEGFTVRFGLYYVNYTDLSRHPKNSACWFTNFASKTSPKSSLFNYFDLDQLIAARVALGGRRALSSAGRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	1.0	0.9793
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	1.4	0.9715
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	2.8	0.9453
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	3.9	0.9505
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	4.2	0.9257
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	4.5	0.9388
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	5.2	0.9098
AT2G17650			AMP-dependent synthetase and l...		Lus10041826 [exp]	7.5	0.9176
AT2G17650			AMP-dependent synthetase and l...		Lus10041825 [exp]	7.5	0.9150
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	8.9	0.8838

Compare expression of checked genes

Lus10012868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.