Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24550 468 / 2e-160 BGLU32 beta glucosidase 32 (.1) AT2G44480 459 / 5e-157 BGLU17 beta glucosidase 17 (.1.2) AT3G60140 457 / 1e-155 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24540 447 / 4e-152 BGLU31 beta glucosidase 31 (.1) AT2G44450 445 / 1e-151 BGLU15 beta glucosidase 15 (.1) AT5G44640 445 / 1e-151 BGLU13 beta glucosidase 13 (.1) AT5G42260 443 / 5e-151 BGLU12 beta glucosidase 12 (.1) AT2G44470 444 / 2e-150 BGLU29 beta glucosidase 29 (.1.2.3) AT3G60120 443 / 2e-150 BGLU27 beta glucosidase 27 (.1) AT5G54570 439 / 4e-149 BGLU41 beta glucosidase 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030518 [exp] 937 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10030577 [exp] 921 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10012871 [exp] 896 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10030911 [exp] 874 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10030516 [exp] 872 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10039513 [exp] 865 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10024152 [exp] 863 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10012868 [exp] 857 / 0 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1) Lus10011828 [exp] 768 / 0 AT2G44480 438 / 4e-146 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 541 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 534 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 529 / 0 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.T085301 [exp] 511 / 9e-178 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 511 / 1e-177 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G223300 [exp] 503 / 2e-174 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 502 / 5e-174 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 501 / 1e-173 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 501 / 2e-173 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 499 / 1e-172 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10012869 pacid=23163023 polypeptide=Lus10012869 locus=Lus10012869.g ID=Lus10012869.BGIv1.0 annot-version=v1.0 ATGGCTACTTTAGCAATTCTAGTGATGATGTTTCTGCTGTCTGGTATCTCTCAGTTATCAGCTGAGCAGGAAATCCCAACCAAAGACCCTTGCTTGGAAT CCGAATACGTATACAAACCCTCCCCGGAGCTTCCCAACGGCCGTTTCGATTTCCCCGACGGGTTTATCTTTGGCACCGCCACTTCTTCCTATCAGATTGA GGGAGCTCATAATTTTACCTATGGCAAGGGTCCCAGCATCTGGGATCGGTTCACTCATGACTTTCCAGACAGGATTCTGGGAGGTGGCAATGGAGATGTG GCATTAGATCATTATCACAGGTTCGAGGAGGATATTGCGAGGATGAAATTCATGAATGTAGATGCATACAGATTCTCCATCTCCTGGCCTCGAATCGTAC CATCTGGCAAGAGAAGTGACGGAGTAAATCAAGAAGGAATTGACTTTTACCACACTCTCCTCGACGCACTCATTCGAAATGGAATCAAACCTTTTGTGAC AATGTATCATTGGGAAACTCCTCAAGCTCTTGAAGCAGAGTATGGTGGCTTTATGAGTCGTAACATTGTGAAGGACTTTGAGGACTACAGTGACATTTTG TTTCAAGAATATGGTTCAAAAGTGTATAAATGGATAACTTTAAATGAGCCTATGGGTAACTCGATGAAATCTTACGACGAAGGGGTTTTCGCACCCGGAC ATTGTTCTGCATGGGTTAATAGAAAATGTGAACGTGGAGACTCCTCAACCGAACCTTACATTGTTACCCATAACCAACTTCTTGCTCATTCTGCTGCTTA CCACTTGTATAAAAACAAGTACCCGCAACATACTGCCGAAATAGGAATAACTCTTGTCACACATTGGTTTGTTCCTTACTCTAATTCATCCGAAGATATT GATGCTGCCCAAAGAGGTTTAGATTGGTTATATGGTTGGTACATGGATCCACTCACCTATGGTCACTACCCTAGAACTATGGTAGACTTATTGGGATCTC GTTTACCAAACTTCACAGAAGAGGAGTCCAACTTGCTTAAAAAGTCTTTTGATTTTTTAGGCCTCAATTATTACACCGGTTATTTTGTCAAGAACGTTAA AGATGAAGACTTTGATTATGATCATCTGCGATATGCAACTGATCACCACGGCATTACTACACCCGACAGAGACGGAGTGTTCATTGGACCACATTTGGGT TCGTATTGGCAGTATTTATATCCCGAAGGTCTACGACTCCTACTGGAGTTCACGAAGGAAAACTATGATGATCCAATTATTTACATTACCGAAAATGGAA TGTCAGCAAAGGATAACGCTACTCAAACACTGGCAGAAGCCCTGAACGACACAACTAGGGTTGATTTCTACAACCAACATCTGACAAGTGTTTGGCAAGC CATGAATGAGAGCAACGTGAACGTAAAAGGGTACTTCGCGTGGTCCTACGCTGACAATTTCGAATGGAACGAGGGGTACACAGTTAGATTCGGGCTGTAC TACATCAACTACACCGATCTCTCGAGACACCCAAAGTACTCTGCTTGCTGGTACACCAAATTCTGCGACAAGACCCGGCCGGCTGTGTCCACTTTTAACT ACTTTGATCTCGATGAGCTCATCATCACTACACGCGCTACTCTGAACAGTGGCCGTCGGGCTCTCTCCTCCGCTGGCCGCCGCCTCTAG
AA sequence Show only first row Show all	>Lus10012869 pacid=23163023 polypeptide=Lus10012869 locus=Lus10012869.g ID=Lus10012869.BGIv1.0 annot-version=v1.0 MATLAILVMMFLLSGISQLSAEQEIPTKDPCLESEYVYKPSPELPNGRFDFPDGFIFGTATSSYQIEGAHNFTYGKGPSIWDRFTHDFPDRILGGGNGDV ALDHYHRFEEDIARMKFMNVDAYRFSISWPRIVPSGKRSDGVNQEGIDFYHTLLDALIRNGIKPFVTMYHWETPQALEAEYGGFMSRNIVKDFEDYSDIL FQEYGSKVYKWITLNEPMGNSMKSYDEGVFAPGHCSAWVNRKCERGDSSTEPYIVTHNQLLAHSAAYHLYKNKYPQHTAEIGITLVTHWFVPYSNSSEDI DAAQRGLDWLYGWYMDPLTYGHYPRTMVDLLGSRLPNFTEEESNLLKKSFDFLGLNYYTGYFVKNVKDEDFDYDHLRYATDHHGITTPDRDGVFIGPHLG SYWQYLYPEGLRLLLEFTKENYDDPIIYITENGMSAKDNATQTLAEALNDTTRVDFYNQHLTSVWQAMNESNVNVKGYFAWSYADNFEWNEGYTVRFGLY YINYTDLSRHPKYSACWYTKFCDKTRPAVSTFNYFDLDELIITTRATLNSGRRALSSAGRRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	0	1
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	2.4	0.9303
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10034271 [exp]	2.8	0.9281
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10040274 [exp]	3.0	0.9276
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	4.2	0.9327
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10040219 [exp]	4.4	0.9210
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10002314 [exp]	4.9	0.9165
AT1G29760			Putative adipose-regulatory pr...		Lus10034735 [exp]	5.5	0.9288
AT5G41810			unknown protein		Lus10001907 [exp]	7.9	0.9315
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	9.2	0.9297
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	11.8	0.9230

Compare expression of checked genes

Lus10012869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.