Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56400 135 / 2e-37 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 116 / 5e-30 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT4G23810 92 / 2e-21 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT2G40740 89 / 4e-20 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT2G46400 87 / 2e-19 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT5G24110 85 / 8e-19 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT4G11070 81 / 3e-17 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT5G45260 80 / 2e-16 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G66600 74 / 5e-15 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT5G01900 71 / 3e-14 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030517 [exp] 448 / 8e-160 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10034244 [exp] 219 / 4e-70 AT3G56400 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 207 / 2e-65 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025216 [exp] 108 / 4e-27 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10022736 [exp] 106 / 2e-26 AT5G01900 105 / 1e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) Lus10014177 [exp] 102 / 7e-25 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025133 [exp] 101 / 1e-24 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10001062 [exp] 93 / 3e-21 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10039331 [exp] 92 / 7e-21 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090300 [exp] 135 / 2e-37 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 122 / 3e-32 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.006G109100 [exp] 120 / 1e-31 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.002G168700 [exp] 92 / 4e-21 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.003G138600 [exp] 88 / 1e-19 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 88 / 1e-19 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.012G031700 [exp] 88 / 2e-19 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.001G092900 [exp] 81 / 2e-17 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.013G090400 [exp] 73 / 2e-14 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.003G169100 [exp] 69 / 3e-14 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10012870 pacid=23162984 polypeptide=Lus10012870 locus=Lus10012870.g ID=Lus10012870.BGIv1.0 annot-version=v1.0 ATGGGTATGCAGGGGAACAACAAGCTGCGGCAGGAGATGGCGATGAAGGAGCTTGCTCAAGGCCATGGATTTGCATCCCAGCTCCAGCTCCTCCTCAAGA ACAATAAAGACCATCCTGCAGCTGCAGATGAACTTGTCAACAAGATCTTGGAATCTTTCACTTGTGGTATCTCTGCTCTGATGAGTACCGCTGCTTCGAC TTCCATGGTGGCCATTAGCGATCAGGCAGGGGAGCAGCAGTCCTCTGTTTCCGGGATGTACGAGGATTCCGGCGAGAGTTGCCGGAAAAGGTCGTCGGCG GCGGCGGCGGGGAAGAGTGGCGGAAGGGACAATAGAGGGTCCTATAAGAGAAGAAAGAGTGGACACTCTGATGTAAAAATCTCATCGTCGATGCACGACG AACATTCGTGGAGGAAGTATGGCCAGAAGGAGATCCTCAATGCCAAATTCCCTAGGAGCTACTATAGATGTACACACAAGTACGACCAAGGCTGCAAGGC CACCAAGCAAGTCCAGATGCTTGAACAAGAAACCAAAGAGACCATGTACTCCATAACTTACATGGGGCTCCACACTTGTCGGAACGCCACCGGGGTGTCT CGATCGTCGGTGGAGCCTCTTTCAACGGCGGTGAATGTGAAGAAAGAGATTCGTACCATGGTCAATGTAGATGACATCAATAACAATGTGAACAACGAAG AGAACCCGAGTGAAGTGATGACCGAGATTAATGATAATGTGGACTTGTGGATGCAGGGTTTGGAGTCATTTGATCAAGCAGAGGAGGCAATCAGTAACTA TGATTACCATCATTATAGTAATTATGGGTTCTGTGGGGATCAAAGTGGGCAAGTTTTGGATTTTGATTTCGGGGTTAAGGATATTGATGATTTCGAGACC GACTTTCGGTTCGATTATCACTAG
AA sequence Show only first row Show all	>Lus10012870 pacid=23162984 polypeptide=Lus10012870 locus=Lus10012870.g ID=Lus10012870.BGIv1.0 annot-version=v1.0 MGMQGNNKLRQEMAMKELAQGHGFASQLQLLLKNNKDHPAAADELVNKILESFTCGISALMSTAASTSMVAISDQAGEQQSSVSGMYEDSGESCRKRSSA AAAGKSGGRDNRGSYKRRKSGHSDVKISSSMHDEHSWRKYGQKEILNAKFPRSYYRCTHKYDQGCKATKQVQMLEQETKETMYSITYMGLHTCRNATGVS RSSVEPLSTAVNVKKEIRTMVNVDDINNNVNNEENPSEVMTEINDNVDLWMQGLESFDQAEEAISNYDYHHYSNYGFCGDQSGQVLDFDFGVKDIDDFET DFRFDYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	1.0	0.9529
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	2.4	0.9339
AT4G12010			Disease resistance protein (TI...		Lus10042753 [exp]	2.6	0.8810
AT5G57910			unknown protein		Lus10036591 [exp]	3.3	0.8734
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	3.7	0.8630
AT3G13130			unknown protein		Lus10012341 [exp]	4.6	0.9038
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	6.3	0.9006
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	6.9	0.8922
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	9.7	0.8985
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	10.2	0.8700

Compare expression of checked genes

Lus10012870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.