Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24550 464 / 6e-157 BGLU32 beta glucosidase 32 (.1) AT3G60140 447 / 1e-149 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24540 444 / 4e-149 BGLU31 beta glucosidase 31 (.1) AT2G44470 434 / 1e-144 BGLU29 beta glucosidase 29 (.1.2.3) AT2G44460 430 / 5e-143 BGLU28 beta glucosidase 28 (.1) AT2G44480 425 / 8e-142 BGLU17 beta glucosidase 17 (.1.2) AT3G60120 423 / 6e-141 BGLU27 beta glucosidase 27 (.1) AT2G32860 426 / 1e-140 BGLU33 beta glucosidase 33 (.1.2) AT1G26560 409 / 6e-136 BGLU40 beta glucosidase 40 (.1) AT5G42260 409 / 1e-135 BGLU12 beta glucosidase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030518 [exp] 975 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10012868 [exp] 967 / 0 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1) Lus10012869 [exp] 894 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10030577 [exp] 847 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10030516 [exp] 834 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10030911 [exp] 829 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10039513 [exp] 815 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10024152 [exp] 799 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10011828 [exp] 727 / 0 AT2G44480 438 / 4e-146 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 498 / 1e-170 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 494 / 9e-169 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 487 / 9e-166 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.T085301 [exp] 485 / 2e-165 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 484 / 4e-165 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G223300 [exp] 462 / 2e-156 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 461 / 9e-156 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 460 / 1e-155 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 460 / 2e-155 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 458 / 1e-154 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10012871 pacid=23163011 polypeptide=Lus10012871 locus=Lus10012871.g ID=Lus10012871.BGIv1.0 annot-version=v1.0 ATGGCTGGCGGAGGAATGTTCAAGATTTTCACCCCCAAGCTTCGTCTTCAGGCGACCGAGATCCAGTCCTTGGCCTTTTGGGGCGCCGCCGCTGCCACCG GCGGTCTATATCTCACTCAGGTTCTAAATATAAAAGACCAGCTTCGCCTCCTTCCCTACCAACATCTAATGAACAGAGAGGCGGTTACTACTTCTGCCGC CGCCGCCCTCCTCCCACTCTCGGCTTTGATTCCAAACCCAACGTCGACCCTTCCGCTTCTTCCGACTACACCATCAGCTCTCGTTTCTTCTCCAATGCCG ATCGATCTCGTTCTTCCAACATTCATAAGTTCCGTCCTATCAACACTACTAACTCCTCCGAGTTGCTCTACCTCGGCACTCTCGTCAACTCCCACGGAAT CGGTACCGACGCCGCCGGCGGTCCTGTTTCTAACTCCAAAGTCAAAAACGGTAGCTGCTGGTAGCCCTCTGATATTAGCTGATGATGGTGATCCTTGCTC AGCCTCCACCTACGTATACAAACCCTCGCCGGAGCTTCCCAAGGGCCGTTTCGAATTCCCTGATGACTTTATCTTCGGCACTGCCACTTCTTCCTATCAG ATTGAAGGGGCTCATGATTTTACGTTCGGAAAGGGTCCCAGCACCTGGGATAGGTTTACTCATAGCTACCCAGATAGGATTCTAGGAGGCGGTAATGGAG ATGTGGCATTGGATCATTATCACAAGTACATGGAAGATATAGGCAAAATGAAATATTTGAATGTGGATGCATACCGATTCTCCATCTCATGGCCTCGAAT CATACCATCTGGCAAGAGAAGTGACGGAGTAAATCAAGAAGGAATTAATTTTTACCACACCCTCCTGGATGCACTCAATGCAAACGGAATCAAAGCTTTT GTGACAATGTATCATTGGGAAACCCCGCAAGGTCTGGAAGCTGAGTATGGTGGCTTTCTCAGTCGCAACATTGTGAAGGACTTTGAGGATTACAGCGATC TCTTGTTTCAAGAATATGGTTCAAAAGTGTATAAATGGATAACTCTAAATGAGCCTATGGGTAACTCGATGAAGTCCTACGACGAGGGAGTTTTTGCACC CGGTCATTGTTCCGTATGGGTCGATAGAAAATGTCGACTTGGGGACTCATCAACCGAGCCTTACATTGTTACTCACAATCAACTTCTTGCTCATTCCGTT ATTGCCGAAATAGGAATAACCCTTGTCACACATTGGTTTGTTCCTTACGATAATACATCATCAAAAGACATTGATGCTGCTCAAAGAGCTTTGGACTGGT TGTATGGTTGGTATATGGATCCACTAACCTATGGTTACTATCCTAGAACCATGGTAGATTTATTGGGATCTCGTTTACCCCAATTCACACAAGAGGAATC ACACTTGCTTAAAAAGTCATTCGACTTTTTGGGCCTCAATTATTACACCGGTTATTATGTCAAGAACGTTAACGATGATGATTTTGATCAAGTTCATCTT CGATATGCAACTGATCATCACGGCATTACTACGCCTGACAGAGACGGAGAGTACATTGGACCACATTTGGGGTCATATTGGCAGTATCTGTATCCTGATG GTCTACGTTTTTGTGGCATGCAGTTGGGGTCATATTGGCAGTATCTGTATCCTGAAGGTCTACGAGTGCTATTAGAGTACACTAAGGAAAAATATGATGA TCCAATCATCTACATCACGGAGAATGGGTTATCGGAGAAGGACAACGCTACACAGACACTTGAAGAGGCACTACAGGACCAGATGAGGATTGATTTCTAC AACAGTCATCTTACAAGTGTTAAGCAAGCCATGACCGAGAGCCAGGTGAATGTGAAGGGATACTTTGCATGGTCGTACGCCGACAACTTCGAATGGAACG AGGGATTCACAGTTAGGTTTGGGTTGTACTACGTCAACTACACCGATCTCTCCAGACACCCCAAGAACTCTGCTTGCTGGTTCACCAATTTCGCCAGCAA GACCAGTCCCAAGTCCTCATTATTTAACTATTTTGATCTCGATCAGCTCATCGCTGCTCGCGTTGCTCTTGGAGGTCGTCGGGCTCTCTCTTCCGCTGGC CGCCCTTAA
AA sequence Show only first row Show all	>Lus10012871 pacid=23163011 polypeptide=Lus10012871 locus=Lus10012871.g ID=Lus10012871.BGIv1.0 annot-version=v1.0 MAGGGMFKIFTPKLRLQATEIQSLAFWGAAAATGGLYLTQVLNIKDQLRLLPYQHLMNREAVTTSAAAALLPLSALIPNPTSTLPLLPTTPSALVSSPMP IDLVLPTFISSVLSTLLTPPSCSTSALSSTPTESVPTPPAVLFLTPKSKTVAAGSPLILADDGDPCSASTYVYKPSPELPKGRFEFPDDFIFGTATSSYQ IEGAHDFTFGKGPSTWDRFTHSYPDRILGGGNGDVALDHYHKYMEDIGKMKYLNVDAYRFSISWPRIIPSGKRSDGVNQEGINFYHTLLDALNANGIKAF VTMYHWETPQGLEAEYGGFLSRNIVKDFEDYSDLLFQEYGSKVYKWITLNEPMGNSMKSYDEGVFAPGHCSVWVDRKCRLGDSSTEPYIVTHNQLLAHSV IAEIGITLVTHWFVPYDNTSSKDIDAAQRALDWLYGWYMDPLTYGYYPRTMVDLLGSRLPQFTQEESHLLKKSFDFLGLNYYTGYYVKNVNDDDFDQVHL RYATDHHGITTPDRDGEYIGPHLGSYWQYLYPDGLRFCGMQLGSYWQYLYPEGLRVLLEYTKEKYDDPIIYITENGLSEKDNATQTLEEALQDQMRIDFY NSHLTSVKQAMTESQVNVKGYFAWSYADNFEWNEGFTVRFGLYYVNYTDLSRHPKNSACWFTNFASKTSPKSSLFNYFDLDQLIAARVALGGRRALSSAG RP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	1.0	0.9793
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	2.4	0.9538
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	2.4	0.9229
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	4.6	0.9102
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	4.9	0.9433
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	4.9	0.9341
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	5.5	0.9326
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	6.3	0.8457
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	7.9	0.9085
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	8.5	0.8513

Compare expression of checked genes

Lus10012871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.