Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40720 929 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 462 / 7e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 457 / 6e-148 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 436 / 1e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 433 / 2e-139 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 427 / 5e-136 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69350 412 / 1e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 397 / 4e-127 MEF22 mitochondrial editing factor 22 (.1) AT4G39530 399 / 3e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 397 / 5e-125 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030522 [exp] 981 / 0 AT2G40720 512 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 462 / 1e-148 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 459 / 1e-147 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 444 / 4e-143 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 446 / 3e-139 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 436 / 6e-139 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 431 / 4e-138 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 424 / 5e-136 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 422 / 2e-134 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090600 [exp] 1026 / 0 AT2G40720 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 465 / 2e-150 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 456 / 3e-148 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 454 / 6e-146 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 449 / 3e-145 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 448 / 3e-144 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 450 / 6e-143 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 436 / 5e-140 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G052200 [exp] 430 / 2e-137 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 430 / 7e-136 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012873 pacid=23163014 polypeptide=Lus10012873 locus=Lus10012873.g ID=Lus10012873.BGIv1.0 annot-version=v1.0 ATGAGGTTTAGCCTGAATCGGCAAACTGTCCGTCGATTTTCTTCTGCAACGTTAAGCTCGCAATTCTCCGGTCCTAAAATCAAGGACTTAATTCAACAAG GACGGAATGTACAAGCACTCCAGCTGTATGCTCGGCACAATCCTCTTGCCATTTCCAAGTTCACCTTCCCTTCACTTCTCAAAGCTTGTGCTTTTCTCCA AAACCTTCGATATGGAAGAACGATTCACGCAACGATCATCGCCACGGGTCTGTTCATCGACCCGTTTATTACCAGCTCGCTCATCAACATGTATGTGAAA TGCAGGTCACTGCAGGACGCAGTACAGGTGTTCGACGAATTGCCCGAGAGTGAACTTGCAGCTGGGGATTCGTCGATTTGGAACTCGATAGCAGATGGGT GTTTCCGGTTTGGTCGTATTGACGAGGGTGTAGCTCACTTTCGTCGGATGCTGGGTTATGGATTTCCTGCCGATGGGTATTCACTGTGCATTCTGCTTGG GAATTTGGGGTATGAACAAGGAAGGCAAATTCATGGTTATATCGTTCGAAACGTAGTTTGTGGTGACCCTTTCTTGGAAAGTTCGCTCCTTGATATGTAC TTTAGGTGCGGTAGGCCGATGACTTCCTGGCGTGTTTTCGAAAAGATTGAAAATAGGAGGATCAATGTTGTGGCGTGGAATGTGATGATGGGAGGACTTG CTGAGAATGGTTTGTGGGAAGGAAGCTTGGAGTTGTACCTGATGGCCAAGAGTGAGGAAGTTGAACTTGTTTCGGCATCTTTCACCAATACTTTGGGTGC TTGTGGGCGGGGCGACTGTGTAAGTTTTGGCGAACAGGTTCATTCTGATGTCGTTAAGATGGGTTTCGAGGATGATCAATATGTTCTTACCTCTCTGATG ACGATGTATGCCAAGTGCAAATTGGTGGAAGATGCAGAACGAGTGTTTGAGAAAGTAATAGATAAGGGACTTGAACTGTGGAATGCAATGATCTCAGGCT ATGCTGCTAATGGATTTGTTTATGGGGCTTTGGGTACTTACAGGGAAATGAAGCTTTCTCGAATTCTACCTGATTCTTTCACGATGTCACATGTGCTATC TTGTTGTAGTACAGATGAATTGGTCAACTTCGGCAGGTCAATCCATGCTGATTTTGTTAAAATGCCTATAGATAGAACTATTTCTGCAGAAAGTGCATTG CTTACACTGTACTCTAAATGTGGACTGGAGTATGATGCTTACTTGATTTTTAGCAGTATGAAAGACAGAGATGTGGTAGCATGGGGCTCCATGATTTCGG GGTTTTGCCAAAATGGAAACTTTATGGAGGCTTTGGCTCGTTTCGGTGAAATGGAGGAACATGGTGTGAAACCCGATTCTGACATTATGGCAAGCGTCAT AAGCTCTTGTGCGGGGATAGCGAACGTAAAACTGGGCTGTATGATGCACGGATTGGTTATTAAGAGTGGACTGGAGCATGATGTTTTTGTTGCAAGTACC CTTTTGGATATGTACTCCAAGTGTGCGCTCCCTGAGATGGCTGACAATGTCTTTTCTCACATGCGCTTCAAGAACACCGTTGCTTGGAATTCCATGGTAT CTTGTTATAGCCGGAATGGCCAACCTGAGAGGTCGATTGATACGTTTTCTCAATTTCTACAGTGTGGGATGGAACCGGATTCACTCTCTGTCACTAATGT CCTTGTTGCTGTTTCATCCATAGGAGCTCTTCTCAGAGGAAAAGCTCTGCATGGTTACCTCATAAGACAAGGGATTCGGTATGATATTCATGTAGAAAAT GCCATGATTGACATGTATCTTAAATGTGGACTCCTGAAATATGCACAGAATGTTTTCCAGAAGATGCACCTGAAAAACTTGGTTACATGGAATTCAATGA TAGATGGATATGGATCTCACGGTGAGTGCGGGAAAGCAATGGCATTACTGGATGAAATGTTAAATTCCGGGGTCAAGCCTGATCATATTACCTTCGTTTC TCTACTATCCTCTTGCAATCATTCTGGCTTGATTGAGCAAGGCTATAGTCTTTTCCACTCCATGGAAAAGGAGTATGGGGTTGAACCCAGATCAGAGCAT TATGTGAATATTGTTGATATGTTGGGCCGAGCAGGACGGGTTGATGATGCTTACACTCTTATCAAGAACATTCCTACTGAAGCAGACCAAAGTATTTGGA TATCCTTATTAAGTGCTTCCCGAGCTCATCACAATGTGGAGCTCGGAGAAGTTGCAGCTGCTGAGTTACTAAAGATTGAACCAAGTCAAGGCAGCAATTA TGCTCAGATTCTGAATATATATGGAGAAGCTGAGATGTGGGATAGGGCTGCAAAGTTAAGGGCAGTGATGAAAGAGAAGGGGGTCAAGAAGAAAGGTGGA TGCAGTTGGATTGAAGTTAGGAACAGAGTTGATGTTTTCTTCTCTGGAGATTCCTCGTCTCCGCAGACACCTCAGATTTACGAGGCACTGGGTAGCCTTA GGAGAAACATGGTCAACAAAGAAAGCAACTTTGATACTATTGAAGCCTTTTAA
AA sequence Show only first row Show all	>Lus10012873 pacid=23163014 polypeptide=Lus10012873 locus=Lus10012873.g ID=Lus10012873.BGIv1.0 annot-version=v1.0 MRFSLNRQTVRRFSSATLSSQFSGPKIKDLIQQGRNVQALQLYARHNPLAISKFTFPSLLKACAFLQNLRYGRTIHATIIATGLFIDPFITSSLINMYVK CRSLQDAVQVFDELPESELAAGDSSIWNSIADGCFRFGRIDEGVAHFRRMLGYGFPADGYSLCILLGNLGYEQGRQIHGYIVRNVVCGDPFLESSLLDMY FRCGRPMTSWRVFEKIENRRINVVAWNVMMGGLAENGLWEGSLELYLMAKSEEVELVSASFTNTLGACGRGDCVSFGEQVHSDVVKMGFEDDQYVLTSLM TMYAKCKLVEDAERVFEKVIDKGLELWNAMISGYAANGFVYGALGTYREMKLSRILPDSFTMSHVLSCCSTDELVNFGRSIHADFVKMPIDRTISAESAL LTLYSKCGLEYDAYLIFSSMKDRDVVAWGSMISGFCQNGNFMEALARFGEMEEHGVKPDSDIMASVISSCAGIANVKLGCMMHGLVIKSGLEHDVFVAST LLDMYSKCALPEMADNVFSHMRFKNTVAWNSMVSCYSRNGQPERSIDTFSQFLQCGMEPDSLSVTNVLVAVSSIGALLRGKALHGYLIRQGIRYDIHVEN AMIDMYLKCGLLKYAQNVFQKMHLKNLVTWNSMIDGYGSHGECGKAMALLDEMLNSGVKPDHITFVSLLSSCNHSGLIEQGYSLFHSMEKEYGVEPRSEH YVNIVDMLGRAGRVDDAYTLIKNIPTEADQSIWISLLSASRAHHNVELGEVAAAELLKIEPSQGSNYAQILNIYGEAEMWDRAAKLRAVMKEKGVKKKGG CSWIEVRNRVDVFFSGDSSSPQTPQIYEALGSLRRNMVNKESNFDTIEAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10012873 [exp]	0	1
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	8.4	0.8985
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	10.7	0.8840
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	11.6	0.8935
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10037798 [exp]	13.3	0.8397
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	15.9	0.8810
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	16.2	0.8760
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	17.9	0.8594
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	19.2	0.8723
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031111 [exp]	22.2	0.8928
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10025091 [exp]	24.6	0.8835

Compare expression of checked genes

Lus10012873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.