Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40700 793 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 288 / 6e-89 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 273 / 1e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G05450 214 / 1e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G71370 213 / 3e-61 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 211 / 3e-59 DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 188 / 5e-53 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 190 / 1e-51 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 186 / 3e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G20920 187 / 2e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030523 [exp] 1226 / 0 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 280 / 9e-86 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 279 / 1e-85 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 276 / 1e-84 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 219 / 1e-64 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012172 [exp] 227 / 2e-64 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007574 [exp] 225 / 1e-63 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009838 [exp] 217 / 4e-62 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042754 [exp] 199 / 1e-54 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G059100 [exp] 897 / 0 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 283 / 4e-87 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 278 / 2e-85 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G073100 [exp] 228 / 1e-66 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 226 / 1e-64 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 192 / 1e-52 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 186 / 3e-52 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 186 / 4e-50 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 186 / 9e-50 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G097700 [exp] 183 / 3e-49 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10012874 pacid=23163001 polypeptide=Lus10012874 locus=Lus10012874.g ID=Lus10012874.BGIv1.0 annot-version=v1.0 ATGGGAAAAGCTGCGGCGCAAGTTATTGATAGTAAGACGAAGAAGAGAAGAAGAGATGAAGACAAGCTGGAGAACAAAGAAGTTGAAGCTATAGCGACGA AGGGAAGTTCCGATGTGTTTGCAGATTGTTCTTTCTCTGCTCTCGGCCTCCATTCCACCCTCTGCGACCAGCTCCGAGAGAGGATGGGGTTTGAAGCTCC GACGTTGATTCAGGCTCAAGCTATTCCTGTTATTCTCTCTGGCCGCCATGTACTTGTGAATGCTGCTACTGGGACTGGAAAAACCGTTGCATATTTAGCT CCAATTATTCATCACTTGCAGAGCTACATTCCTAAGATTGACCGCTCCCAGGGAACTTTTGCTTTGGTTCTTGTGCCGACGAGGGAGCTGTGCACGCAAG TTTACGAGATTCTGCAGAAGTTATTGCACCGTTTTCACTGGATTGTCCCTGGTTATGTGATGGGTGGTGAAAGCAGAAACAAAGAGAAAGCCCGGCTCCG TAAAGGTATTTCCATTCTAGTCGCAACTCCTGGCCGTCTCTTGGATCACATGAAACATACATCGTCGTTCACGCATTCAAATCTACGCTGGGTAATCTTT GACGAAGCAGATAGAATTTTGGAACTAGGGTTTGGCAAAGAGATAGAGGATATATTGGAAGTCTTAGGTTCCAAGAAAACTGGCTCGACAGACACGGGAA ACCAGCATACAAGTGTCTCTACTGTCCAGAGGCAAAATTTGTTGTTGTCTGCTACATTAAATGAAAAAGTGAATAATCTTGCAAAAATAAGTTTGGAAAG TCCAGTTTTGATTGGCCTTGATGACAAGAAAGCTCATATGGATCCATCACTTCCACGTCATAAAAACATAGAATTCGATGCTGATGATAATCTACTGAAA AGCGCAGCAACCGAAGACTACAGGCTACCTTCTCAAGTAGTGCAGACATATGTGAAAGTGCCATGTGGTGCAAGGCTTTCAGTGCTGCTATCCGTTCTAA AACATCTATTTGAAAAACAAGCATCCCAAAAGATTGTGGTGTTCTTTTCGACATGTGCTGCAGTAGATTTTCACTACGCTTTGTTGAATGGATTCCGCTG GTCAAGCACTTCAAAATCCAATTCAGAACTCAAGGAAACGTTCTTGAAATGCAAGACTTTCCGGCTGCATGGAAATATGGAACAAGAGGATCGGAAAACC ACCTTCCAGTCTTTCAAAACTGAGAAATCAGCTCTTCTTTTTTCATCAGATGTCGCAGCCAGAGGCTTAGATTTCCCTAAAGTTAGATGCATTATACAGT ATGATTCCCCAGGAGACGCTACTGAATACGTTCACAGAGTTGGCAGAACTGCCAGGTTAGGCCAGAAGGGAGATTCTATACTATTTATGCAGCCAGTCGA AGTAGATTACTTGGAAGAGCTGCAAAAGCACGGAGTATCCCTCACAGAGTATCCGGTTCTCAAGATTCTGGATAGTTTCCCTTTGTATGGTCCTTCTCAC GGAGGAAAGAGATCAGTTTTCTTAGACTTGCACCCTTTTCTGGTATCTCTGCAGAGGGCACTTGAATCGTTTGTCGGATCCGAGCCGAGGGTGAACAAGC TGGCGCAGGAAGCGTTCTGCTACTGGGTGCGAGCTTACACGGCTCACCGAGGAGAGCTGAAACGGATATTCGTGGTGAAGAAGCTGCACCTGGGGCATGT TGCGAAAAGCTTTGCCCTGAAGCAACAGCCTTCCCTGGTTGGCGGATACCATTCGAAGCAGATGAAGAAGGATCATAAGCAGAAAGGGTTGGCAAAGAGA AGGAAGGTTACTACTGGTAAAAAAACATGGATCTCCTCCGAGTCTTGA
AA sequence Show only first row Show all	>Lus10012874 pacid=23163001 polypeptide=Lus10012874 locus=Lus10012874.g ID=Lus10012874.BGIv1.0 annot-version=v1.0 MGKAAAQVIDSKTKKRRRDEDKLENKEVEAIATKGSSDVFADCSFSALGLHSTLCDQLRERMGFEAPTLIQAQAIPVILSGRHVLVNAATGTGKTVAYLA PIIHHLQSYIPKIDRSQGTFALVLVPTRELCTQVYEILQKLLHRFHWIVPGYVMGGESRNKEKARLRKGISILVATPGRLLDHMKHTSSFTHSNLRWVIF DEADRILELGFGKEIEDILEVLGSKKTGSTDTGNQHTSVSTVQRQNLLLSATLNEKVNNLAKISLESPVLIGLDDKKAHMDPSLPRHKNIEFDADDNLLK SAATEDYRLPSQVVQTYVKVPCGARLSVLLSVLKHLFEKQASQKIVVFFSTCAAVDFHYALLNGFRWSSTSKSNSELKETFLKCKTFRLHGNMEQEDRKT TFQSFKTEKSALLFSSDVAARGLDFPKVRCIIQYDSPGDATEYVHRVGRTARLGQKGDSILFMQPVEVDYLEELQKHGVSLTEYPVLKILDSFPLYGPSH GGKRSVFLDLHPFLVSLQRALESFVGSEPRVNKLAQEAFCYWVRAYTAHRGELKRIFVVKKLHLGHVAKSFALKQQPSLVGGYHSKQMKKDHKQKGLAKR RKVTTGKKTWISSES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40700			P-loop containing nucleoside t...		Lus10012874 [exp]	0	1
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	1.4	0.8605
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	6.0	0.8596
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	8.4	0.8109
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	13.3	0.8268
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	16.6	0.8134
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	17.1	0.8454
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	18.4	0.8027
AT5G41190			unknown protein		Lus10008488 [exp]	22.8	0.7849
AT3G01160			unknown protein		Lus10041866 [exp]	27.1	0.7683
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	30.1	0.8226

Compare expression of checked genes

Lus10012874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.