Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78770 758 / 0 APC6 anaphase promoting complex 6 (.1) AT3G16320 49 / 9e-06 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04240 44 / 0.0003 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030525 [exp] 993 / 0 AT1G78770 847 / 0.0 anaphase promoting complex 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G389300 [exp] 822 / 0 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1) Potri.011G108800 [exp] 820 / 0 AT1G78770 907 / 0.0 anaphase promoting complex 6 (.1) Potri.001G389500 [exp] 219 / 4e-68 AT1G78770 244 / 1e-78 anaphase promoting complex 6 (.1) Potri.018G086300 [exp] 49 / 7e-06 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.006G164000 [exp] 49 / 1e-05 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.012G075000 [exp] 43 / 0.0006 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10012876 pacid=23163015 polypeptide=Lus10012876 locus=Lus10012876.g ID=Lus10012876.BGIv1.0 annot-version=v1.0 ATGAGAGAAGAGCAACTCGAGAAGCTGCGAGGCGTGGTGCGGGACTGCCTCAGCAAGCATTTGTACTCTTCCGCCATCTTCTTCGCCGACAAGGTCGCCG CCTTCACCAACGACCCTGCTGATATCTACATGCAAGCCCAGGCGTTATTCCTCGGCCGCCACTACCGCCGGGCTTTCCACGCCACTACCGCCGTGCTTTC CACCTACTCAACGCCTCCAGGATCGTGCTTCGTGACCTCCGATTCCGTTACCTCGCTGCCAAATGCCTCGTTAGTTGCATTTTTCCATTTTCCTGATTGG AAAACTGAGGAGTTGAAAGAGTGGGATCAATGTCTGTTGATGCTGGGTGGTGCTAAGGTTGATGATGATGGGAATGTTTATGACACGGGGGATCCGAATG CTATGTACTTGGATAAAGATGGGGAAGACCGTGAGATTAATATATCTTCAGCGATATGTTTTCTAAGAGGAAAGGCATACGATGCCTTGGAAAATCATGC ACAGGCTCGGCTGTGGTACAAAGCTGCTGTTAAAGCCGATCCCCTATGCTATGAGGCTCTGGAATGTCTTTGTCAAAATCACATGCTGACTTGTGAAGAA GAGACAAGTCTGCTTTCATCCCTGCAATTCAGTGATGAAGATGGCTGGCTTTCATCGTTTTATTCATGCTTGGGGAAAAAGTGCAACAAAGAAAGTGTTG TAGAAGCCAACTTCCGAGAGCTTGAGAACGAGAGTTGCAACAATAATCCTTCCAGTCCATATTTTATGCGCACACTGAAAAATGATACTGATCTCTTGGC CTGCAAAGCTGAGTACTACCATCAATCGGGTGAATACCAGAAGTGCTTCGAAATGACATCTTCATTGCTTGAGAAGGACCCTTTCCACTATAGAAGCACT TTGGTACATTTGGCTTCTGCCATGGAGCTTGGAAATTCAAATGAGCTTTATGTCATGTCGTGCAATTTGGTCAAGGATGATCCTCAAAGCCAATGGTTTC CTGTCAGGGCTCTTTCATGGTTTGCTGTTGGTTGCTACTACTCTTCTATCAAGAAATATGACCAGGCACGTCTATATTTCGGCAAAGCAACTAGTCTCGA CGGGACCTTTGCACCTGCTTGGATAGGTTATGGGAATGCTTATGCTGCTAAAAAGGAGGGTGATCATGCAATGTCCGCCTACCGTACAGCAGCCCGTTTA TTTCCAGGGTGCCACCTGCCAACATTATATATTGGGATGGAGTACATGCGGAGTCATAGCTTCAAACTTGCTGAGCAGTTCTTATTGCAGGCAAAGGAAA TCTGCTCTTTTGATCCATTAGTATATAATGAACTTGGAGTTGTCGCTTATAGTATGAAGGAGTATAATAAGGCTGTGTTCTGGTTCGAGAAGACTTTGGC ACATATTCCTTCATTAAGTCAACAGTGGGAACCTACTGTCGTAAATCTCGCCCATGCGTACCGGAAGCTAAAGAGATACGACAATGCAATCTCCTACTAC GAGAGAGCTCTTGCATTATCTACCACAAGTTTGAGTACTTATTCCGGACTCGCATACACTTACCATCTGCAGGACAATTTCACAGCTGCAATTACGTACT ACCACAAGGCACTGTGGCTGAAACCAGAGGATAAGTTCTGCGGAGAAATGTTGAGCCTGGCGCTTGTCGACGAAGCTCGTAGTGGTACGGATCCTGAGTT CGAGTCGCGAATGAGTGAGGTTTTCGAGCATTGA
AA sequence Show only first row Show all	>Lus10012876 pacid=23163015 polypeptide=Lus10012876 locus=Lus10012876.g ID=Lus10012876.BGIv1.0 annot-version=v1.0 MREEQLEKLRGVVRDCLSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAFHATTAVLSTYSTPPGSCFVTSDSVTSLPNASLVAFFHFPDW KTEELKEWDQCLLMLGGAKVDDDGNVYDTGDPNAMYLDKDGEDREINISSAICFLRGKAYDALENHAQARLWYKAAVKADPLCYEALECLCQNHMLTCEE ETSLLSSLQFSDEDGWLSSFYSCLGKKCNKESVVEANFRELENESCNNNPSSPYFMRTLKNDTDLLACKAEYYHQSGEYQKCFEMTSSLLEKDPFHYRST LVHLASAMELGNSNELYVMSCNLVKDDPQSQWFPVRALSWFAVGCYYSSIKKYDQARLYFGKATSLDGTFAPAWIGYGNAYAAKKEGDHAMSAYRTAARL FPGCHLPTLYIGMEYMRSHSFKLAEQFLLQAKEICSFDPLVYNELGVVAYSMKEYNKAVFWFEKTLAHIPSLSQQWEPTVVNLAHAYRKLKRYDNAISYY ERALALSTTSLSTYSGLAYTYHLQDNFTAAITYYHKALWLKPEDKFCGEMLSLALVDEARSGTDPEFESRMSEVFEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	0	1
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	1.7	0.8885
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	1.7	0.8972
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	4.2	0.8917
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	5.7	0.8407
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10041983 [exp]	6.9	0.8111
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	7.3	0.8255
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	9.8	0.8550
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	11.8	0.8782
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	12.0	0.8533
AT4G12540			unknown protein		Lus10038281 [exp]	12.7	0.8558

Compare expression of checked genes

Lus10012876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.