Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56370 1077 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 910 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 653 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G51740 323 / 8e-97 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G12460 263 / 1e-74 Leucine-rich repeat protein kinase family protein (.1) AT5G62710 253 / 4e-73 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 260 / 2e-72 Leucine-rich receptor-like protein kinase family protein (.1) AT1G62950 256 / 5e-72 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 255 / 1e-70 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G36180 252 / 1e-69 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030526 [exp] 1659 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 946 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 937 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025139 [exp] 910 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 909 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035687 [exp] 572 / 0 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 370 / 3e-112 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10035783 [exp] 337 / 2e-102 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037276 [exp] 297 / 6e-86 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G091000 [exp] 1206 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 1197 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 1029 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 1011 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G147300 [exp] 679 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 637 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G114500 [exp] 440 / 1e-139 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G223900 [exp] 385 / 6e-118 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.016G126300 [exp] 323 / 1e-96 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.001G129000 [exp] 277 / 5e-82 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012877 pacid=23163005 polypeptide=Lus10012877 locus=Lus10012877.g ID=Lus10012877.BGIv1.0 annot-version=v1.0 ATGGGAAGAAGAAAGCTTGGGACTTTGCTTCTCCTCCTGCTCATCGCCATTTCCACTTGCTCCTCTGTTCTAGGATCTCTGTCTCCATCCCTAAACGACG ACGTTTTGGGCCTGATAGTGTTCAAATCCGACCTCCAAGACCCAGACGGAAAGCTTGCCTCCTGGAACCAAGACGACGACACTCCTTGCAACAACTGGTT CGGAGTGAAATGCAACCCCAGATCCAACCGGGTCACCGAGCTCAACCTAACTGGGCTCTCCCTCTCGGGTCGGATCGGCCGTGGACTCCTCCAGCTCCAA TTCCTCCGCAAGCTAACCCTCTCAAGTAACAACCTCACCGGCTCTTTCCCCGGAGAGCTCTCCAACCTCCAGAACCTCACCGCCGTCGATTTAGCCAACA ATTCCTTCTCCGGGGAACTCCCCAGCGACTTCTTCGCCCAATGTGGGTCTCTCAGAGCTATTTCTTTGAGCCAGAACAGATTCTCCGGGAAGATTCCTGA TTCCTTAAGCTTATGTACTAGTCTTGTCTATGTCAATTTCAGCTCCAATCAGTTCTCTGGCTCTCTGCCAGCTGGCATTTGGGGTCTGACCGGGTTAAGG TCAGTTGATTTCTCCTCTAATTCGCTGGAAGGTGAGATTCCTTCAGGGATTGAGAAGTTGAACAACTTGCGTGCTGTGAACTTGAGCAAGAACAAGTTTA CTGGTAACATTCCTGATGGTATCGGAAGGCTTTTCTTGCTTAGAACTGTTGATTTCAGCTGGAATTCCTTCTCTGGATATCTTCCTAGAACAATGAGAAG CCTTGGAATGTGTTGCTATATGAGCATTGGTCATAATTCGTTGACAGGTGAAGTTCCTAGCTGGATTGGGGAAATGAAACGCCTAGAAAGTTTGGATCTT TCTATGAATAACTTCTCTGGTCGGGTTCCTGCTTCGATTGGGAAGCTTGGAATGCTTAAAGTATTGAACTTTTCTGGTAATGCTCTATCCGGTTGGCTCC CGGATTCGTTGTCAAGCTGTGGTAGTCTTACTGCTTTGGATTTTAGCCGAAATGAGTTGACTGGTTGGCTCCCGGATTTCAACTCGAGTTCGAAGTTTGA GTATTTGGATTTGTCGAATAATCAGCTGTCTGGCGAGATTGGTTCCGGCATTGGCTACCAAAGTAAGCTGATGGTGTTGGATTTGTCGAAGAATTCGCTT GCTGGCCCTGTACCTGGTGCCATTGGGAAGCTGAAGGAGCTTGGTGTTCTGGACTTGAGTGATAACAAGTTTAATGGGAGCATACCTTTGGAAATTGGGG CAGCTTCTTCGTTGAAGGAACTTAGACTGGATTCCAACTTCCTGTCTGGTCAGATTCCGAATTCGATCGGAGACTGCGCAAAGTTAACCACATTAATTGC TTCTGGGAACATCTTGAGTGGACCTATACCTGCATCAATGGCCAAACTCACCAACTTACAATATGTAGACTTATCCATCAACACCCTCTCCGGAACCTTA CCAAAGCAATTAGCCAATCTTCCAAACATCATCACTTTCAACATCTCACACAATCATCTGCAAGGTGAACTTCCCTCGGGTGGTTTCTTCAACATCATAT CGCCTTCTTCCGTCTCCGGAAACCCCTCCCTTTGTGGAAGTGTTGTCAACAACACATGCCCGAGAGTCCTCCCCAAACCCATCGTACTCGACCCGAATTC GACCACTGAGTCAACCAATGGCTCGCTCCCTCAGAATCTCGGTCACAAGAGGATCATTTTAAGCATATCTGCACTCATTGCCATCGGTGCAGCAGTTGTG ATCTTCGTGGGAGTAATCACGATCACTTTGCTTAATCTCAGAGTTCAATCATCAACTTATCGATCCGCAGCTGCATTAACTTTCTCTGCAAGCAATGACG ATGGATTCAGCAGTTCGAGTAATAACTCGGATCCGAAAAATTCCGGGAAGCTTGTCATGTTTTCAGGTGACATTGACTTTAGTGCTGGATCACATGCCTT GCTCAACAAGGATTGCGAACTCGGTCGTGGAGGATTCGGAGCAGTTTACCGTACTGTCCTTGGAGACGGGGGCCAGAATCCAGTAGCGATCAAGAAGCTC ACTGTCTCGAGCCTTGTGAAATCTCGAGACGATTTCGAAAGGGAAGTCAAGAAACTAGGGAAGATTAGGCACCGGAATCTCGTGCAACTCGAAGGCTACT ACTGGACTCCGTCGTTGCAGCTGCTCATTTACGAGTTCCTATCCGGTGGATCTTTGTACAAGCATCTCCATGATGGTGGGAATATTCTTTCCTGGAATGA GAGATTCGATCTGATTCTTGGCACAGCAAAGGGGCTGGCTCATTTGCACAAATGTGGGATCATACATTACAACATCAAGTCGAGTAACATCCTGATCGAT GGTTCATCGGGGGAGGCGAAAGTCGGAGACTTTGGCCTTGCAAGGCTGTTACCAATGCTGGACCGGTATGTCTTGAGCAGCAAGATTCAGAGCGCGCTAG GGTACATGGCGCCCGAGTTCGCGTGCAGGACTGTGAAGATAACCGAGAAATGCGATGTGTATGGATTCGGTGTATTAGTTCTCGAGATTATCACGGGTAG GAAGCCTGTGGAGTATATGGAAGATGATGTCGTGATGCTTTGTGACACAGTGAGGGCAGCATTGGAGGAAGGGAGGGCGGAGGATTGCATCGACGAGAGG CTCGAACGAGGTGGAGGGCTGTTGGCATCGGATGAGGTGGTTCCGGTGGTGAAGTTGGGGTTGATTTGTACCTCGCAGGTGCCATCGAACCGGCCTGATA TGAGGGAGGTTGTTAACATATTGGAGATGATCCGATGCCCTTCTGAAGGACACGAATGA
AA sequence Show only first row Show all	>Lus10012877 pacid=23163005 polypeptide=Lus10012877 locus=Lus10012877.g ID=Lus10012877.BGIv1.0 annot-version=v1.0 MGRRKLGTLLLLLLIAISTCSSVLGSLSPSLNDDVLGLIVFKSDLQDPDGKLASWNQDDDTPCNNWFGVKCNPRSNRVTELNLTGLSLSGRIGRGLLQLQ FLRKLTLSSNNLTGSFPGELSNLQNLTAVDLANNSFSGELPSDFFAQCGSLRAISLSQNRFSGKIPDSLSLCTSLVYVNFSSNQFSGSLPAGIWGLTGLR SVDFSSNSLEGEIPSGIEKLNNLRAVNLSKNKFTGNIPDGIGRLFLLRTVDFSWNSFSGYLPRTMRSLGMCCYMSIGHNSLTGEVPSWIGEMKRLESLDL SMNNFSGRVPASIGKLGMLKVLNFSGNALSGWLPDSLSSCGSLTALDFSRNELTGWLPDFNSSSKFEYLDLSNNQLSGEIGSGIGYQSKLMVLDLSKNSL AGPVPGAIGKLKELGVLDLSDNKFNGSIPLEIGAASSLKELRLDSNFLSGQIPNSIGDCAKLTTLIASGNILSGPIPASMAKLTNLQYVDLSINTLSGTL PKQLANLPNIITFNISHNHLQGELPSGGFFNIISPSSVSGNPSLCGSVVNNTCPRVLPKPIVLDPNSTTESTNGSLPQNLGHKRIILSISALIAIGAAVV IFVGVITITLLNLRVQSSTYRSAAALTFSASNDDGFSSSSNNSDPKNSGKLVMFSGDIDFSAGSHALLNKDCELGRGGFGAVYRTVLGDGGQNPVAIKKL TVSSLVKSRDDFEREVKKLGKIRHRNLVQLEGYYWTPSLQLLIYEFLSGGSLYKHLHDGGNILSWNERFDLILGTAKGLAHLHKCGIIHYNIKSSNILID GSSGEAKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEIITGRKPVEYMEDDVVMLCDTVRAALEEGRAEDCIDER LERGGGLLASDEVVPVVKLGLICTSQVPSNRPDMREVVNILEMIRCPSEGHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	0	1
AT5G47400			unknown protein		Lus10007801 [exp]	2.0	0.8863
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	2.4	0.8698
AT5G66330			Leucine-rich repeat (LRR) fami...		Lus10028359 [exp]	2.4	0.8775
AT3G57880			Calcium-dependent lipid-bindin...		Lus10012026 [exp]	4.0	0.8497
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	4.2	0.8616
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027968 [exp]	4.5	0.8198
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	5.3	0.8669
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	8.5	0.8353
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	10.0	0.8621
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	10.5	0.8381

Compare expression of checked genes

Lus10012877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.